Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0152 ATGGTTTTGTGGTCATATCCACCTACAGCACGGCAGTTAGCCATAACTGCTGGTGCATTTATAGCCGGTGCTTCATTATTTGCTGTTGGAGCTTATCTCTCTCTGGTAAATATAGGTCCTCAACAAGCTCGGGCAAAAGCTCGCAGTGAATTAATCAAGAACCATCTCCGTAAGATTAACTTGGCAACTAATCACTGCTTGGTTAATCCTGGGATGAATCTAGAAAGACAAGATGGTGAACATGTTAATGGAAGTCCTAATCAGACAAAATTAATCATGACAAATGGTCTATGTGTACTGGCATCTATTGAACTGGAAGGTTCTAAGATCAGTCTCAAGTACAGGTATTGCAAGTTCTTTGCTCGTGGAGCATGTATCAAAGGGGACCAATGTGAATATTCTCATGACAGAAAGAATCCTTCAATTAATATTTGTAGGTTCTATCAGAAAGGAATATGTGCTTTTGGTGGTCAATGCAAATATAAACATATCCAAACTTCTCAAGTGCAATCTTTGGAACATGAAAGCCATCTCCTGAATTTTGATAGACATGGAAAGAGTATAAAACTTAAGCATCAAGATTACCAAAAGAATTGCGATGCCAGTGAACCCAGTACTGCTTTACCATTAAGAAAAAAGTGTTCTTGTGTTCCTGGAGACCTATGTGTGTACTGTAAAAAGTTCTGCTTTTATCATTCTGAACCAAATGTGAGAGAGGAGCATTTGCAAACTTGTGAGAAAAAGGAAAAGTACCTTGAGACTTTGAATAAAAGTCAAGAAATAGAGTGCAGAATTTGCTATGAACGTGTTCTTTCAAAAGCTAAAGCAGACGAATGTAAGTTCGGTATTCTTTCTGAGTGCGATCATCCTTTCTGTTTATCATGTATCAGGAATTGGCGTAGTAGTGCTCCAACCTCAGTGATAAGGTTAAGGTCCCATAGAAATGTGAAGACCTGCCCCATGTGCCGGAAGTTATCATATTATGTGATTCCAAGTACTATATGGTATTTTACAATGGAAGAGAAACGGGAAATTATTGACAACTACAAGACAAGCTGCAAGTTGATTAATTGCAGGCATTTTGACTTCGGAAATGGGTATTGTCCCTTTAGGGATATTTGTTTCTACAGGCATACTGTGAAGCCTGGTTCGTATACATGGATACATCACAAACCACCACCACCTCCACGCAGATCATATCTAATGAATATGCTCAATCAATTTTGGGAATCAGTCATTCCTCCAAGTTTGGAGTTTTTCATTGATATGGATCCATCAGAGATAATGCGTTCATCAGAGACACTAGTTAATTCAATGCAGTTTGATGCTGACACCTCAAATGAAGAAACTGACCCTTTTAGCTTGGCTGCTATGTCAGAAGTTTTAGATTCTAGTTCAGACACCATTGATTCTGAAGACTTGAATCTATTTGAGATTATACCATTAAATCATCAGGGTCCGGATGGTTCATGGTGGTTTGGTATTGAAGGTTTTGATGATCAAGAAATGGGTGTTGTGCCTTCTCCAGAGGAGCAGGGGGGTTCATCTTTGTCTGAACCTGATATGCCTCCATCAGAGACAATTGGTAGTTCTTCTGGTCATGAAGATACTAAAGAATCAAATGATGAGGAACTGAATCCTGTGGAGCCATCATGA 1656 0.3907 MVLWSYPPTARQLAITAGAFIAGASLFAVGAYLSLVNIGPQQARAKARSELIKNHLRKINLATNHCLVNPGMNLERQDGEHVNGSPNQTKLIMTNGLCVLASIELEGSKISLKYRYCKFFARGACIKGDQCEYSHDRKNPSINICRFYQKGICAFGGQCKYKHIQTSQVQSLEHESHLLNFDRHGKSIKLKHQDYQKNCDASEPSTALPLRKKCSCVPGDLCVYCKKFCFYHSEPNVREEHLQTCEKKEKYLETLNKSQEIECRICYERVLSKAKADECKFGILSECDHPFCLSCIRNWRSSAPTSVIRLRSHRNVKTCPMCRKLSYYVIPSTIWYFTMEEKREIIDNYKTSCKLINCRHFDFGNGYCPFRDICFYRHTVKPGSYTWIHHKPPPPPRRSYLMNMLNQFWESVIPPSLEFFIDMDPSEIMRSSETLVNSMQFDADTSNEETDPFSLAAMSEVLDSSSDTIDSEDLNLFEIIPLNHQGPDGSWWFGIEGFDDQEMGVVPSPEEQGGSSLSEPDMPPSETIGSSSGHEDTKESNDEELNPVEPS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0152 551 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 164 IPR000571 GO:0046872
Lele30g0152 551 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 113 136 IPR000571 GO:0046872
Lele30g0152 551 ProSitePatterns Zinc finger RING-type signature. 287 296 IPR017907 -
Lele30g0152 551 SMART c3hfinal6 352 380 IPR000571 GO:0046872
Lele30g0152 551 SMART c3hfinal6 113 137 IPR000571 GO:0046872
Lele30g0152 551 SMART c3hfinal6 139 165 IPR000571 GO:0046872
Lele30g0152 551 ProSiteProfiles Zinc finger C3H1-type profile. 111 138 IPR000571 GO:0046872
Lele30g0152 551 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Lele30g0152 551 MobiDBLite consensus disorder prediction 501 551 - -
Lele30g0152 551 Pfam Zinc finger, C3HC4 type (RING finger) 263 322 IPR018957 GO:0046872
Lele30g0152 551 SUPERFAMILY CCCH zinc finger 142 163 IPR036855 GO:0046872
Lele30g0152 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 336 IPR013083 -
Lele30g0152 551 Gene3D - 109 179 - -
Lele30g0152 551 MobiDBLite consensus disorder prediction 511 531 - -
Lele30g0152 551 SUPERFAMILY CCCH zinc finger 112 136 IPR036855 GO:0046872
Lele30g0152 551 SMART ring_2 263 322 IPR001841 -
Lele30g0152 551 PANTHER MAKORIN-RELATED 117 430 IPR045072 GO:0000209|GO:0061630
Lele30g0152 551 ProSiteProfiles Zinc finger RING-type profile. 263 323 IPR001841 -
Lele30g0152 551 ProSiteProfiles Zinc finger C3H1-type profile. 352 381 IPR000571 GO:0046872
Lele30g0152 551 SUPERFAMILY RING/U-box 253 329 - -
Lele30g0152 551 CDD RING-HC_MKRN 263 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0152 Lele-ChrLele30 1519199 1525114 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele30g0152 zf-C3HC4 2.6e-07 CL0229