Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0148 ATGTTCCATCGCCATTACCGACCTCACAAGCCCTTCAAATCCCCGTTTCTCTCTCCGCCCCCCAGCCTTTCCCCAACTTTCCCTTGCTTTTCCTTCTGCCCCAAACAGAAATTCCCAAGTTTCTCTCTTTCTGTGTTTCGCTTCTTTGCAATACATCGAAGGGAAATCATGGTTCAGATTCAGAAAACGGAGAAGGAAGAGACCGAGTTCAAGGTTCCTGAAACAATCACCCCTTGCGTCAACAACTGCGGTGTCACAGTTAATCCGGCCACCAATAATATGTGTCAGAAGTGCTTCGCCGCCGCCGCCGCCTCAACCACAACCTCCTCTACAGGGATTTCTGCTCCTTCTAAATTTTCCGAGGACAAAAGTTCTAGATCCGCACCGTCTCGCTCGCCAAAGAGGTCGCACCCATCTGATGAGGAGCCGACGCAGAATATATCGTCAGATCGGACGAAGTCGGATGAGACAACGCCATCTGAAGCCAAGCGGGTGGTGAATCGATGTTCTGGATGCCGAAGGAAGGTCGGGTTGACCGGATTCAGATGCCGGTGTGGCGAGTTGTTCTGCGCTGAGCATCGGTACTCTGATCGACACGACTGCTGTTACGACTACAAAGCCGCCGGACGTGAGGCGATCGCGAGGGAAAATCCGGTGGTAAAAGCGGCGAAGATCGTGAAGGTTTGA 687 0.524 MFHRHYRPHKPFKSPFLSPPPSLSPTFPCFSFCPKQKFPSFSLSVFRFFAIHRREIMVQIQKTEKEETEFKVPETITPCVNNCGVTVNPATNNMCQKCFAAAAASTTTSSTGISAPSKFSEDKSSRSAPSRSPKRSHPSDEEPTQNISSDRTKSDETTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCCYDYKAAGREAIARENPVVKAAKIVKV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0148 228 MobiDBLite consensus disorder prediction 109 160 - -
Lele30g0148 228 FunFam Zinc finger AN1-type containing 6 143 224 - -
Lele30g0148 228 MobiDBLite consensus disorder prediction 109 123 - -
Lele30g0148 228 SMART A20_3 76 100 IPR002653 GO:0003677|GO:0008270
Lele30g0148 228 Gene3D - 156 214 IPR035896 -
Lele30g0148 228 SUPERFAMILY AN1-like Zinc finger 152 222 IPR035896 -
Lele30g0148 228 ProSiteProfiles Zinc finger A20-type profile. 73 107 IPR002653 GO:0003677|GO:0008270
Lele30g0148 228 Gene3D - 62 155 - -
Lele30g0148 228 Pfam A20-like zinc finger 78 99 IPR002653 GO:0003677|GO:0008270
Lele30g0148 228 MobiDBLite consensus disorder prediction 124 160 - -
Lele30g0148 228 ProSiteProfiles Zinc finger AN1-type profile. 163 209 IPR000058 GO:0008270
Lele30g0148 228 SMART AN1_Zf_4 169 206 IPR000058 GO:0008270
Lele30g0148 228 Pfam AN1-like Zinc finger 169 206 IPR000058 GO:0008270
Lele30g0148 228 PANTHER AN1-TYPE ZINC FINGER PROTEIN 77 227 - -
Lele30g0148 228 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 59 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0148 Lele-ChrLele30 1477340 1478026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0148 66 228 C2H2 Transcription Factor Family AT3G52800 39.881 6.10e-29 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0148 30 1477340 1478026 Lele31g0166 31 1591093 1591957 hybridization
Lele30g0148 30 1477340 1478026 Lele32g1240 32 13386315 13387191 hybridization