Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0142 ATGAGTGTTATGTATAGTCCCAATGTTCTAAATTACTCAGATGGTGAGCTTCGGAGAAACCCAGAAATGGATTCAATTCATCACCACTTGAATTCTGGATTAATGAGGTACGGTTCTGCTCCAAGCTCATTTCTGGCAAGCCTTGTTCATAATGAGGAAGCTTCTAGAAGCATAGATCATCATCATCATCGTCATCGTCAGAATCCATCTTCTTCAAGTGCAGAAATGGAAGCCATGTTGGCAAAGCTGGTTTCTTCATCATCAGACAATGGATGGATCAAGCAGGAAGAAACAGGGGAATCTGTTTCAGAGGGACACAATGGGTATAATAATTCTAATTATGGTTCTCGGATGATTTATCAATCTCAGACTCAGCAGGTTCAAGACTTTCCAAATGGGTCTTTAGGTTCTTCTGGGAATGCTTTTGATGGCTCATTCAATTCATCTGAGTCCGAAGTTAGGTCTAATAATAATAATAATAATCTCTTTAGACAGAAAAGCTCCCCTGCTGGTCTGTTCAACAATTTCTCAGTTGAAAACGGTTTTGCAACATGGGGTGATCATGTTTCAAATGGCCAAGCTTCTACATCAGCTAGGGCATTATCATCTTGTTCAAGACAATTGCCTGATATAGCAGAAGATGGGAATGAAAACCTAGAAGAAGCAACTTGTGTTGAAATTGAAAATAGAAGAAATCTGAGAAATGATAAAAATGGCAACAACAACACTGATGAATGTTACATTCCCAGCTTCACAAGTGACTTCTGGGATTCTCCTTCATTCAATGACACCAAAACAGCTAGTGATAATGATGTACTCATGTTTTCTACTTCAAATGGTTTTGAAACTCAGCAAACAAGCACAGCAGATATGTTGGATTTAGCAGTTGATTATATTAAAGATTTGCAGAAACAAGTTCAGATACTAAAGCAAAGTGCAAGTGTTCAATTTTGGAGAATCCTTACGGAGATGGCTCGTCGGCAGAGTGATTTAGAGGAGGGGATCGACTACATGTTCAAGATTGTGATGATCGGCGACTCTGGCGTCGGGAAATCCCAGCTCTTGAATCGTTATGCTAGGAATGAGTTCAATGCGAAATCGAAGGCGACGATCGGAGTTGAATTTCAGACTAAGACGGTGCTCATGGATCACAAGGTTGCCAGGGCCCAGATTTGGGATACTGCTGGTCAAGAAAGGTCAATAAAGTTTTTCAAAATCACACAGGTACCAGGTGATTACTTTACTACTGCCTATTACAGAGGAGCAATTGGTGCATTGCTGGTATATGACATAACCAGGCAAGATACCTTTGATCATGTTGTAACATGGTTGGAGGAGCTACAAATGCATGCAGATAATAATGTTACTGTTATGTTTGTTGGCAACAAATGTGACCTTGGTTCGATGCGAGTGGTACCTGTGGATGTAGACAAAGAGCTTGCACAGAAGCATGGTCTTTTCTTCATGGAGACATCAGCGGTCGACTCCACCAATGCAGAGCAAGCTTTCCTCGGTCTTCTCTCTCAGATCTAA 1533 0.409 MSVMYSPNVLNYSDGELRRNPEMDSIHHHLNSGLMRYGSAPSSFLASLVHNEEASRSIDHHHHRHRQNPSSSSAEMEAMLAKLVSSSSDNGWIKQEETGESVSEGHNGYNNSNYGSRMIYQSQTQQVQDFPNGSLGSSGNAFDGSFNSSESEVRSNNNNNNLFRQKSSPAGLFNNFSVENGFATWGDHVSNGQASTSARALSSCSRQLPDIAEDGNENLEEATCVEIENRRNLRNDKNGNNNTDECYIPSFTSDFWDSPSFNDTKTASDNDVLMFSTSNGFETQQTSTADMLDLAVDYIKDLQKQVQILKQSASVQFWRILTEMARRQSDLEEGIDYMFKIVMIGDSGVGKSQLLNRYARNEFNAKSKATIGVEFQTKTVLMDHKVARAQIWDTAGQERSIKFFKITQVPGDYFTTAYYRGAIGALLVYDITRQDTFDHVVTWLEELQMHADNNVTVMFVGNKCDLGSMRVVPVDVDKELAQKHGLFFMETSAVDSTNAEQAFLGLLSQI 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0142 510 ProSiteProfiles small GTPase Ras family profile. 327 510 IPR001806 GO:0003924|GO:0005525
Lele30g0142 510 PANTHER DRAB11-RELATED 335 510 - -
Lele30g0142 510 CDD bHLH_AtbHLH_like 284 309 IPR045239 -
Lele30g0142 510 Pfam Ras family 340 509 IPR001806 GO:0003924|GO:0005525
Lele30g0142 510 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 320 IPR036638 GO:0046983
Lele30g0142 510 SMART ras_sub_4 339 510 - -
Lele30g0142 510 Gene3D - 332 510 IPR027417 -
Lele30g0142 510 SMART rab_sub_5 339 510 - -
Lele30g0142 510 MobiDBLite consensus disorder prediction 56 76 - -
Lele30g0142 510 TIGRFAM small_GTP: small GTP-binding protein domain 337 503 IPR005225 GO:0005525
Lele30g0142 510 MobiDBLite consensus disorder prediction 128 158 - -
Lele30g0142 510 PRINTS Transforming protein P21 ras signature 380 402 - -
Lele30g0142 510 PRINTS Transforming protein P21 ras signature 488 510 - -
Lele30g0142 510 PRINTS Transforming protein P21 ras signature 362 378 - -
Lele30g0142 510 PRINTS Transforming protein P21 ras signature 339 360 - -
Lele30g0142 510 PRINTS Transforming protein P21 ras signature 453 466 - -
Lele30g0142 510 SMART rho_sub_3 341 509 IPR001806 GO:0003924|GO:0005525
Lele30g0142 510 FunFam ras-related protein RABA5a 331 510 - -
Lele30g0142 510 ProSiteProfiles small GTPase Rab1 family profile. 334 510 - -
Lele30g0142 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 510 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0142 Lele-ChrLele30 1405184 1412364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0142 285 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 75.000 3.85e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0142 30 1405184 1412364 Lele31g0159 31 1539866 1542046 hybridization
Lele30g0142 30 1405184 1412364 Lele32g1247 32 13439654 13441769 hybridization