Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0137 ATGGCTTTATCCTCTTCCCTTTTCTCACCACCCCATCTTCTTTCCAATCACACTACAAAATCCATTTCAACTTCTTCAAGATTCTCTAATCACCTTCTGAAATCTGTCTTTCCACAACCCTTTGTCAAATCGGCGCCTTCTCCGGTAGTTACAACACCCAGAAATTACCGGAGACCCTTTGCTGTTGCAGAAGAAACTGTGGTCACTACTTCACCTGACCCGAAATCCGACGCCGCGAGGAAGCTCTATATTGGGAACATTCCACGCAATATCGATAACAATGAGCTTGCCCGGATTGTTGAAGAGCATGGTGCTGTTGAGAGAGCGGAGGTTATGTATGACAAATACTCTGGAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAGACGGTTGAGGATGCAAATGCAGTAGTTGAGAAGCTAAATGGCACTGAAATCGGAGGTCGTGAAATCAAAGTAAATATAACAGAAAAACCTTTGCAAACAGTTGATCTATCTATTCTCCAGGCAGAGGAATCTGAATTTGTTGACAGTCCCCACAAAGTGTATGTAGGAAATCTTGCCAAAACAGTAACAACTGATGTACTTAAAGACTTCTTCTCTTCAAGTGGAAATGTTCTTAGTGCCAAGGTTTCACGTGTTCCTGGGACCTCAAAATCCACTGGTTTTGGTTTTGTCTCATTTTCTTCAGCTGAGGATGTGGAAGCTGCAATCTCATCTTTCAACAATTCCTTGTTAGAAGGGCAACGAATTCGTAAAGTTGATCATCTTTTCCAAGACTGTAATGCTGTTTTGACTGGTCTCAGCAAGGCATTTGCTGCTATTCAACTTACTTTGCCAGAGGATGCAAGGAGGGCACCATTTCATTCTATAACACTGACAGAGGCATTTGACCTTGATGCAATCATGTTGGATGGCATTGACGAGGAGTAA 933 0.4266 MALSSSLFSPPHLLSNHTTKSISTSSRFSNHLLKSVFPQPFVKSAPSPVVTTPRNYRRPFAVAEETVVTTSPDPKSDAARKLYIGNIPRNIDNNELARIVEEHGAVERAEVMYDKYSGRSRRFAFVTMKTVEDANAVVEKLNGTEIGGREIKVNITEKPLQTVDLSILQAEESEFVDSPHKVYVGNLAKTVTTDVLKDFFSSSGNVLSAKVSRVPGTSKSTGFGFVSFSSAEDVEAAISSFNNSLLEGQRIRKVDHLFQDCNAVLTGLSKAFAAIQLTLPEDARRAPFHSITLTEAFDLDAIMLDGIDEE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0137 310 CDD RRM_SF 182 252 - -
Lele30g0137 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Lele30g0137 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 252 IPR000504 GO:0003723
Lele30g0137 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Lele30g0137 310 FunFam 30S ribosomal protein 2, chloroplastic 167 256 - -
Lele30g0137 310 Gene3D - 61 163 IPR012677 -
Lele30g0137 310 PANTHER OS02G0815200 PROTEIN 48 252 - -
Lele30g0137 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 252 IPR000504 GO:0003723
Lele30g0137 310 CDD RRM_HP0827_like 81 158 - -
Lele30g0137 310 SUPERFAMILY RNA-binding domain, RBD 175 252 IPR035979 GO:0003676
Lele30g0137 310 SMART rrm1_1 81 154 IPR000504 GO:0003723
Lele30g0137 310 SMART rrm1_1 181 254 IPR000504 GO:0003723
Lele30g0137 310 Gene3D - 164 253 IPR012677 -
Lele30g0137 310 SUPERFAMILY RNA-binding domain, RBD 71 158 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0137 Lele-ChrLele30 1381877 1385826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0137 35 251 Eukaryotic Initiation Factors Gene Family AT1G22760 24.885 1.72e-11 63.2