Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0123 ATGACGATGGAGCTTGGATTGAGATTAGGAGCTTCGAAGCCTTTCACTTTCATGGAAAATAATAAGCCTCCTCAAGAACTCGCCTTAGGCCTCAACACTACCTTATCGATTGGTCCAATCACTACCACCAGCAAAGGCGGTGAAGAAGAAGAAGAAGAAGAAGAAGGCAACAAGAAGGAAAATCACAGTACTACTGTGAAAGAAGATCATGAAGCTTCGAATTATAAATTCCCTTCTGCTTCTCTTTCCTCTTCTTCCAAATCCAACAACAACTTACAGCTTCATCTTCTTCCTCACTCCAAACCTGTACCTCTATCTTCCTTCTCATGGCCTCCTCCTTCTGACAACTGTGATGAAGTGGGGGCTAATTCAGGGAGGGGTTTGAAGGTGAAGACAAAGGCGGAGGAGGAAGAGTCGGAGGAGAGGACGGTGGTGTCGTCGTCTCCGATGAGTGGAGCGTCATCGTTTCAGGTGGATCTGTGTATATACAGTAGTAATAATAATAAAGGATCAGGGAATAATTACAACAACAGAAAGAGGCTGCAGAATAATGAATCAGAAGGTGAAGCAGGTAATTCTAATTATAATTACTACGATCAAAGGGGTTGTTCATCAAGAGCAAGCGATGAAGAGGACAACAACAACGTTGGTGGTGTTCGGGGTTGTGGTACCAGAAAGAAACTTAGGCTCTCTAAAGAACAATCTGCTTTTCTCGAAGAAAGCTTCAAAGAACACAGTACTCTTAATCCTAAACAAAAACTCGCTCTTGCCAAACAACTTAATCTTCGTCCTCGCCAAGTCGAAGTCTGGTTTCAAAACCGAAGAGCAAGGACGAAGCTGAAGCAGACGGAGGTGGATTGTGAATACTTGAAGCGATGCTGTGAGACTCTATCAGAAGAGAATAGGATGCTACAGAAGGAGCTTCAAGAACTGAGAGCTTTGAAGGCTTCAAACTCGAACCCTTTCTTCATGCAATTACCGGCCACCACCTTAACCATGTGCCCTTCCTGTGAGCGCGTTGCACCCAATAATTCCTCCTCCAATAATAATAATAATACTAATAATAATTCTGCTTCTTCCTCTAAACCCACAATTGCTTTCCCCTTCGCCAAACCCAAGTTCTATCCTTTTCCTCACTCCAAACCACACCAGTCTTGA 1158 0.4361 MTMELGLRLGASKPFTFMENNKPPQELALGLNTTLSIGPITTTSKGGEEEEEEEEGNKKENHSTTVKEDHEASNYKFPSASLSSSSKSNNNLQLHLLPHSKPVPLSSFSWPPPSDNCDEVGANSGRGLKVKTKAEEEESEERTVVSSSPMSGASSFQVDLCIYSSNNNKGSGNNYNNRKRLQNNESEGEAGNSNYNYYDQRGCSSRASDEEDNNNVGGVRGCGTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLSEENRMLQKELQELRALKASNSNPFFMQLPATTLTMCPSCERVAPNNSSSNNNNNTNNNSASSSKPTIAFPFAKPKFYPFPHSKPHQS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0123 385 Pfam Homeodomain 225 279 IPR001356 GO:0003677
Lele30g0123 385 FunFam Homeobox-leucine zipper protein 18 208 286 - -
Lele30g0123 385 SMART halz 281 326 IPR003106 GO:0006355|GO:0043565
Lele30g0123 385 MobiDBLite consensus disorder prediction 129 143 - -
Lele30g0123 385 Pfam Homeobox associated leucine zipper 281 315 IPR003106 GO:0006355|GO:0043565
Lele30g0123 385 MobiDBLite consensus disorder prediction 341 364 - -
Lele30g0123 385 CDD homeodomain 225 282 IPR001356 GO:0003677
Lele30g0123 385 Gene3D - 229 279 - -
Lele30g0123 385 MobiDBLite consensus disorder prediction 56 74 - -
Lele30g0123 385 SMART HOX_1 223 285 IPR001356 GO:0003677
Lele30g0123 385 Coils Coil 294 317 - -
Lele30g0123 385 MobiDBLite consensus disorder prediction 167 218 - -
Lele30g0123 385 MobiDBLite consensus disorder prediction 30 152 - -
Lele30g0123 385 MobiDBLite consensus disorder prediction 76 96 - -
Lele30g0123 385 ProSiteProfiles 'Homeobox' domain profile. 221 281 IPR001356 GO:0003677
Lele30g0123 385 MobiDBLite consensus disorder prediction 167 203 - -
Lele30g0123 385 SUPERFAMILY Homeodomain-like 211 282 IPR009057 -
Lele30g0123 385 MobiDBLite consensus disorder prediction 341 365 - -
Lele30g0123 385 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 60 360 - -
Lele30g0123 385 ProSitePatterns 'Homeobox' domain signature. 256 279 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0123 Lele-ChrLele30 1239026 1240800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0123 185 377 Homeobox Transcription Factor Family AT4G37790 56.701 8.63e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele30g0123 Homeodomain 1.9e-15 CL0123