Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0101 ATGTTTTTGTCAAAGAAAAATCCATACTTGACGGCAAATCAGCTCTATCCCTATGCCTATAGCCCTACATACGGAGGAGCTTCACCGCCGTCCGCCGCCGCCGCCGCCACAACCTCTGCCAGTACCCTTTCCTCCAGCCGATATCTTTCTACCGATATGTATTTTCCTCCACGCAAAGACTCCATTCTTCGATACTCCTCTTATGTCGCTTCCGATGCCGACATTGGCCCACCTGGTGTTTCTACCAGGCTCTCCAGTGCCGCCTCAGGGCAAACATCTACAACCGCTTCCCAGTTGCTATCTCAAGCTTCTTGGCCTGCTGCTATTGCTTCAGCTGCTGCAGCAAATGTTGGGTCTTCTGCATTGGAGTCGATTGTTAACATGAAGCGCTCTTCTGATGCGCTCTACCATCCAACTTTTTTGCAAACCCATAACGCACTTGGGCAAAGTGAAGCTTGGTATTCTACAAATTCATTAACAAAGCGCCCTAGATACGAGAGTACAAGCCATTTGCCTATATACCCACAGAGGCCAGGAGAGAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATGCCTGCATATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAGATGTTGTTACAAGTGAGACTCTTCCTGAGAGACCAGGAATACCAGATTGTCCTTACTTTCTTAAAACTATGAGATGCAAGTTTGGTTCAAGGTGCAAGTTTAATCATCCCAAGCATTTGTTTGAAAATGCTGATATTTCTACCTTACCTGAGAGGCCTTCAGAGCCCCCATGCGCGTTTTACATGAAAACTGGAAAATGCAAGTTTGGTGTTACCTGTAAATTTCATCACCCAAGAGGCATACAGATTCAGCTGTCTGAAGAACAGAATGTTGCTGTTGAGCAGACCCACTTGACCCCTAATATAAAGGGGGCTTTAGGGGATACACAATTATCTAATATTTTTAGTTCGTACACTGCTCCTGTATTGCGTAATAGCAAAGGGCTTCCTATAAGACTGGGTGAAGTAGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAATATGGTGCTACATGCCGCTACAATCATCCTGATAGGAATGCTGCATCAATTTATCAAGCTATTGACCCCAGATTGTCAAGTGCATCGTCCCAGGTGGAAATAGCACCAACCGTCTATCCTCAACGACCAGGACTGATGGAGTGTGATTACTATATGAAGACTGGAGAGTGTAAATTTGGAGAAAGATGCAAGTTCCATCACCCAATTGACCGATCAGCACTATCACAGTCAAATGCAGCCGCACAACAAGCTGTTAAACTCACTCTTGCAGGATTACCCAGGAGAGAGGGTGTTGTCATCTGTCCATATTATTTGAAAACTGGCACCTGCAAGTTTGGTGGAACCTGCAAGTTTGACCACCCTCCTCCTGGAGAAGTTATGGAGATGGCAAAGTCACAAGGAGCAGAAACTGATGAAGGAGAGGAAGCCGAAGCTGATGAAAAACATGCTGATCCTGTTCAGAAAAAGTAA 1569 0.4538 MFLSKKNPYLTANQLYPYAYSPTYGGASPPSAAAAATTSASTLSSSRYLSTDMYFPPRKDSILRYSSYVASDADIGPPGVSTRLSSAASGQTSTTASQLLSQASWPAAIASAAAANVGSSALESIVNMKRSSDALYHPTFLQTHNALGQSEAWYSTNSLTKRPRYESTSHLPIYPQRPGEKDCAHYMLTRTCKFGDACIFDHPIWVPEGGIPDWKEVPDVVTSETLPERPGIPDCPYFLKTMRCKFGSRCKFNHPKHLFENADISTLPERPSEPPCAFYMKTGKCKFGVTCKFHHPRGIQIQLSEEQNVAVEQTHLTPNIKGALGDTQLSNIFSSYTAPVLRNSKGLPIRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAASIYQAIDPRLSSASSQVEIAPTVYPQRPGLMECDYYMKTGECKFGERCKFHHPIDRSALSQSNAAAQQAVKLTLAGLPRREGVVICPYYLKTGTCKFGGTCKFDHPPPGEVMEMAKSQGAETDEGEEAEADEKHADPVQKK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0101 522 PANTHER PROTEIN PHOSPHATASE RELATED 337 389 - -
Lele30g0101 522 SUPERFAMILY CCCH zinc finger 354 378 IPR036855 GO:0046872
Lele30g0101 522 Gene3D - 226 310 - -
Lele30g0101 522 Gene3D - 411 502 - -
Lele30g0101 522 MobiDBLite consensus disorder prediction 489 522 - -
Lele30g0101 522 SUPERFAMILY CCCH zinc finger 464 488 IPR036855 GO:0046872
Lele30g0101 522 SUPERFAMILY CCCH zinc finger 410 436 IPR036855 GO:0046872
Lele30g0101 522 ProSiteProfiles Zinc finger C3H1-type profile. 408 436 IPR000571 GO:0046872
Lele30g0101 522 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Lele30g0101 522 FunFam zinc finger CCCH domain-containing protein 37 406 502 - -
Lele30g0101 522 Gene3D - 135 216 - -
Lele30g0101 522 Gene3D - 334 388 - -
Lele30g0101 522 SUPERFAMILY CCCH zinc finger 273 297 IPR036855 GO:0046872
Lele30g0101 522 ProSiteProfiles Zinc finger C3H1-type profile. 461 489 IPR000571 GO:0046872
Lele30g0101 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 413 434 IPR000571 GO:0046872
Lele30g0101 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 376 IPR000571 GO:0046872
Lele30g0101 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 463 488 IPR000571 GO:0046872
Lele30g0101 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 203 IPR000571 GO:0046872
Lele30g0101 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 297 IPR000571 GO:0046872
Lele30g0101 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 256 IPR000571 GO:0046872
Lele30g0101 522 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Lele30g0101 522 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Lele30g0101 522 ProSiteProfiles Zinc finger C3H1-type profile. 229 257 IPR000571 GO:0046872
Lele30g0101 522 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Lele30g0101 522 SMART c3hfinal6 229 256 IPR000571 GO:0046872
Lele30g0101 522 SMART c3hfinal6 177 204 IPR000571 GO:0046872
Lele30g0101 522 SMART c3hfinal6 408 435 IPR000571 GO:0046872
Lele30g0101 522 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Lele30g0101 522 SMART c3hfinal6 461 488 IPR000571 GO:0046872
Lele30g0101 522 FunFam Zinc finger CCCH domain-containing protein 37 133 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0101 Lele-ChrLele30 1052366 1064417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0101 348 503 C2H2 Transcription Factor Family AT3G02830 42.308 1.98e-34 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele30g0101 zf-CCCH 1.2e-10 CL0537