Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0093 ATGCCAGTGTTGTTCTCCGCGCGGTTGGTTCTGCTAGTTGGAGAGACACTGCCCTTGCGAAGGTTCTTTCCCGCTTCAAGTACTTCTTGTTTTCATAGCAGTGTCCATTGTTTAAGTCGGATAGAGGACCAACATGCTCCCCTTACTCCCTTAAGCATTGGTTTGAATAATGAAAATGAAACTAGGAAGGATAACAAAGTCAATAAACTGAAGCAATTGGGTTCCTCCTCTTTAGACTCAAAGAGCAGAGCAAAGACCATTGGTATCAATAAAATTAAAGCAGTTGGAGCAACAAAGAAGCAGCTGGTAGAATCTGCTCTGTTTGCCGCTAAGTCTTTTTCTGAAATTGGCCTCCCTCATTTGTTGGTTGCGAGATTGGAAAATGAAGGTTTTACGGTTCCAACTGAAGTGCAGTCTACAGCAATTCCTACAATTTTGAATAATCATGATGTCATAATTCAATCTTACACAGGATCAGGGAAAACATTGGCTTATCTTCTTCCCATTTTATCTAATGTTGGCCCTTTGAGGAACAAAACTTCTGAAGGTAACAGTAATGGTGAACCTGGGAAGAAAATGGGAATAGAGGCTGTAATTGTTGCTCCCTCTAGGGAACTGGGTATGCAGATAGTGAGGGAGTTTGAGAAGATACTTGGACTTGCTAACAAAAAGGCTGTTCAACAGCTTGTGGGAGGCGCGAACAGATCCAGGCAAGAAGAAGCTCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGAATAGCAGAGCTTAGCGCAGCCGGGAAACTTCACACCCATGGCTGTCGTTATTTGGTCCTAGATGAAGTCGATGAACTCCTGTCGTTTAACTTTCGGGAGGACATGCACCGGATACTAGAACATGTGGGGAAAAGATCAGGAGCTGACCCACGAGCACAAAATGGTACCGTTCCTAGACGGGTTGAGCGTCAAACTATTATGGTGTCTGCAACTGTTCCGTTTTCTGTTGTCAGGGCAGCCCGGAGCTGGGCGCATGATCCGCTTCTTGTCCAAGCCAATAGAGTTGGCCCGCTCGAAACCATTTCTCCTTCCATACCTGTCAATTTATCAGGATCTGCACCTAGCTCAAATTCTAACTCTACTACTACCCTTACACAGGCAGCAGAGAGTCTACCTCCAGCATTAAAACATTATTACTGTATCACAAAGTTACAGCATAAAGTTGATACTTTGAGAAGGTGTATTCATGCACTAGACGCCAAATATGTTATAGCTTTCATGAACCATATCAAGCAACTTAAGGATGTTGTCTTCAAGCTAGAGGCACGTGGGATGAAAGCTGCAGAGTTACATGGGGATCTTGGGAAACTTGCTAGGTCAACAACTCTGAAAAAGTTCAAGAATGGTGAGGTGAGAGTGCTCGTGACCAATGAATTATCCGCACGGGGATTGGACGTGGCGGAATGCGATCTCGTGGTTAATTTGGACTTACCCACAGACTCGATTCACTATGCACACCGAGCTGGCAGGACCGGAAGGCTCGGGAGGTCTGGTACAGTGCTTTCAATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAACTGCAAAAGCAGCTTGGGGTGCCAATAGTGAGCTGTGATTTTGTGGAGGGAAAACTACTTGTCGAAGAAGAGAAAATGCTAAATGGTGTGAGATAA 1686 0.446 MPVLFSARLVLLVGETLPLRRFFPASSTSCFHSSVHCLSRIEDQHAPLTPLSIGLNNENETRKDNKVNKLKQLGSSSLDSKSRAKTIGINKIKAVGATKKQLVESALFAAKSFSEIGLPHLLVARLENEGFTVPTEVQSTAIPTILNNHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTSEGNSNGEPGKKMGIEAVIVAPSRELGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRYLVLDEVDELLSFNFREDMHRILEHVGKRSGADPRAQNGTVPRRVERQTIMVSATVPFSVVRAARSWAHDPLLVQANRVGPLETISPSIPVNLSGSAPSSNSNSTTTLTQAAESLPPALKHYYCITKLQHKVDTLRRCIHALDAKYVIAFMNHIKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRSGTVLSICEEPEVFVVKKLQKQLGVPIVSCDFVEGKLLVEEEKMLNGVR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0093 561 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 104 549 - -
Lele30g0093 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Lele30g0093 561 Gene3D - 73 349 IPR027417 -
Lele30g0093 561 CDD SF2_C_DEAD 391 520 - -
Lele30g0093 561 Pfam Helicase conserved C-terminal domain 405 511 IPR001650 -
Lele30g0093 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 550 IPR001650 -
Lele30g0093 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Lele30g0093 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 531 IPR027417 -
Lele30g0093 561 SMART helicmild6 430 511 IPR001650 -
Lele30g0093 561 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Lele30g0093 561 CDD DEADc 122 347 - -
Lele30g0093 561 Gene3D - 388 546 IPR027417 -
Lele30g0093 561 SMART ultradead3 130 357 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0093 Lele-ChrLele30 1014406 1016091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0093 112 539 Eukaryotic Initiation Factors Gene Family AT3G19760 24.009 8.42e-40 148