Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0076 ATGTTCCCTCCAAAGAAGGGCTCATCTATGAATTCTCAACAGAGAGGCATGTGTGTTCAACCTGACTCTGGCCTCGTCCTCACCACTGATCCCAAGCCTCGCCTTCGCTGGACCGTCGAACTCCATGAACGCTTCGTCGATGCCGTCACTCAGCTCGGAGGCCCTGACAAGGCAACACCGAAGACTATCATGAGGGTGATGGGTGTAAATGGTCTCACGCTTTACCACCTAAAGAGTCACCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGACTTCAATGATCATTCGATCAAGGATGGTATGAGAGCTTCGGCTTTAGAACTTCAACGAAATTCTGCCTCCTCTTCCTCCATGATCGGTCGCAATATGAACGAGATGCAAATGGAGGTCCAAAGACGACTTCACGAACAACTAGAGGTTCAGAAACATCTTCAGCTGAGGATTGAAGCACAAGGGAAATACATGCAGAGCATATTAGAGAAGGCATATCAAACACTTGCAGGTGAAAATCTGAAGAACATTAATAATATTGGAGCTCATCATCATCCTCAAGCCAATATGATCCCTCAAGATTTCACTTCGATCCCTCTCAATACTAATTTCCCTTCTTTTCAAGATCATCAGCTTAACATCTATGATGGTGCTGGTGACCAGCTCGATCATCATCTTCATCACCACCAGTTCATGCCAAATAGCAGCAACAGTTCTGAAAATCTGTGTGTGGGGATGAATCATAATAATAATAAGAACAAGAGGCCTTTGATTTGGAACAATGAAGATCATCTGGGAACTGCATCTTCGTGTCTTGATACCGATGATCCTTTTAAGCAAGTTTCAATGGTGGATAGAACCTGCACCAGTTCTGATGAGAATAATAACATTAATAATGTTATTGATCCTATTTCAGAGATTTATGACACTAAGCCTTTGCTTCATCAAGTAGACGACATTTTAGGGGATTCTTTGACTGATCATAAGAAGCTTGGTGAAAGGCCTTCGCCAAAAAGGGCACATTCCCTTCAACATGCAGATCAAAGGATGAGTCCTATGATTAGCACTGGTACACCCTTTTAG 1080 0.4333 MFPPKKGSSMNSQQRGMCVQPDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVNGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDGMRASALELQRNSASSSSMIGRNMNEMQMEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENLKNINNIGAHHHPQANMIPQDFTSIPLNTNFPSFQDHQLNIYDGAGDQLDHHLHHHQFMPNSSNSSENLCVGMNHNNNKNKRPLIWNNEDHLGTASSCLDTDDPFKQVSMVDRTCTSSDENNNINNVIDPISEIYDTKPLLHQVDDILGDSLTDHKKLGERPSPKRAHSLQHADQRMSPMISTGTPF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0076 359 MobiDBLite consensus disorder prediction 325 359 - -
Lele30g0076 359 FunFam Myb family transcription factor 31 89 - -
Lele30g0076 359 Pfam MYB-CC type transfactor, LHEQLE motif 128 167 IPR025756 -
Lele30g0076 359 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Lele30g0076 359 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Lele30g0076 359 Gene3D - 31 89 - -
Lele30g0076 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 241 IPR044848 GO:0003700
Lele30g0076 359 MobiDBLite consensus disorder prediction 325 344 - -
Lele30g0076 359 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Lele30g0076 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0076 Lele-ChrLele30 836995 838779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0076 1 339 G2-like Transcription Factor Family AT1G79430 56.704 1.07e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele30g0076 Myb_DNA-binding 1.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0076 30 836995 838779 Lele31g0088 31 853029 854777 hybridization
Lele30g0076 30 836995 838779 Lele32g1302 32 13980703 13982439 hybridization