Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0063 ATGAAGCCATCTCCGTGCAACAGAAGAAGATCGGAGAGACTTGAGAAGAAAGAGAGGAAGTCATATTCAATAAGAAGAACAAGGAGAAGAGCCACCTCTAGAAGAACCACAGTGAGCAGGGGCGACAATAACAATAATTCTGACCGCCCAGAATCTCCGGTGGGGGCCGGAAATAATATACTTAGCCAACTGCAACGTGAAATTGGAGAAGATGGATATTACTACGAATGTCTCCTCTGCGAAGATGGAGGGAGACTGCTATGTTGCGACAAGTGCCCGGGCACGTATCATCTGGAATGCCTTGGACTTCGGTCTGTTCCATGGGGCGAATGGCTGTGCGCTACTTGTCGTGATAACGCTGCAGGTTCATCAAAGGAGAATTTTCTGAAGGATTTGGGTTCCAAAAAACCTTTACCCTTCAAGAAGAAGAAAGCTGCTTCTTCTAGTTCTCCATCATCTTCTTCACAGAGCGAATAG 477 0.4654 MKPSPCNRRRSERLEKKERKSYSIRRTRRRATSRRTTVSRGDNNNNSDRPESPVGAGNNILSQLQREIGEDGYYYECLLCEDGGRLLCCDKCPGTYHLECLGLRSVPWGEWLCATCRDNAAGSSKENFLKDLGSKKPLPFKKKKAASSSSPSSSSQSE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0063 158 ProSitePatterns Zinc finger PHD-type signature. 77 116 IPR019786 -
Lele30g0063 158 SUPERFAMILY FYVE/PHD zinc finger 74 118 IPR011011 -
Lele30g0063 158 MobiDBLite consensus disorder prediction 127 158 - -
Lele30g0063 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 156 IPR013083 -
Lele30g0063 158 ProSiteProfiles Zinc finger PHD-type profile. 74 119 IPR019787 -
Lele30g0063 158 SMART PHD_3 76 117 IPR001965 -
Lele30g0063 158 PANTHER PHD FINGER PROTEIN 12 67 125 IPR042163 GO:0003714|GO:0045892
Lele30g0063 158 MobiDBLite consensus disorder prediction 1 21 - -
Lele30g0063 158 MobiDBLite consensus disorder prediction 37 57 - -
Lele30g0063 158 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0063 Lele-ChrLele30 724469 725366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0063 77 116 PHD Transcription Factor Family AT1G05380 55.000 2.26e-12 62.0