Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0053 ATGGACAAGAGAAAGCATAAATCTAGGAAGGAAGATTATGAAGGGAAGGAAGAGGATTCAAAGAGGAGTCGCCATGAACGAGACGGTGAGAAGACTAGTGATAAAGGTAAGGATAGAAGTGAAGGGAAGCATAGGGATAGAGAGAAGAGGGAGCGTGAGAGCCGACGCTATGAGAGAGAGAAAAGCAGCGATTCTGATGAAAGATTTGATAGAGAAAGAGAGAAGCATAGAGATAAGGACAAGGATAAAGATAGGACCCGAGTTCATGATGAAGAAAGAGAAAGAGCTCGAGACAAGAAAAGGGAAAGGGACAGGGAAGATAGGGGAAGGGAGAGGAGAGATAGGAGGGAGAAAGAAAGGGAGAAGGATAGAGAAAGGGAACGGGATAGGAGAGAGCGTGAAAGGGAGAGGGAAGTTGAAAAAGAAAGGGGGAGGATAGGAAGAGAGAGGGAGAAGCGTAGGGAAGTTGATAGTGAGTACAGTGATGATGATTCCAAGGATAGAGAAAGAAAGCGGCACAAGAAAGATGATGATGATTACAGGGGTAGAGAGCAGGAGAAAAGTGTCAGCAAGTCAAGTAGGCAAACTGAGAATAATGAAGAGAGCCCAAGGAAAAAGAGTGACAATGACAACTCAGATGCCAATGAAAGCAAACCAAGCCGCGAGGAGGAGCTAGAGGATGAGCATAGGAGGTTGGATGAAGAGATGGAAAAGAGGAGAAGGAGAGTTCAGGAATGGCAAGAGCTGAGGAGGAAGAGAGAAGAAGCTGAGAAAGAAAAGCATGGTGAAGCAAGTGCTGATGTACCTAAGTTTGGAAAGGCCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACCGCTACAGGGATGCCAAATACAGCTATGGATGTAGATGAAGATGACAAACCTTTGGACAAAGAACCTAAGGATTCTATGGCAGTAGATGTTAATAATGGACCTGTTACATCTAATTTACTAGATGAAGCTGATGGAACTCAGGCAGATGAGGAAATTGATCCATTGGACGCTTTCATGAATTCTATGGTTTTGCCTGAAGTTGAGAAGCTGAATAGTGCTGTGGCTCCTGAATCTTCTAATCAAATTGCTGACTTAAAGCCCAAGGGTAACAAGGACGAGCAAAGTAATGGTGGGAACCCTAGGAAAGGTTCTAATAAAACAATTGGGAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGAAGACCTTGAAATTGAGGGTGATCCATTAGATGAAGATGATGATGAATTCATGAAAAGAGTAAAGAAGACCAAAGCTGAGAGACTTGCTATTGTTGACCACTCAAAGATTGATTATGAGCCATTCAAGAAAAATTTTTATATTGAAGTAAAGGAGATTGCGAAGATGACTCCTCAAGAAGTTGCAGCGTACAGGAAGGAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTGAAATCATGGAATCAGATTGGTCTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTTAATTATGAAAAGCCAATGACTATTCAAGCTCAGGCCCTCCCTGTGATTATGAGTGGTAGAGATTGCATAGGTATTGCTAAAACTGGGTCAGGAAAAACCCTTGCTTTTGTTCTGCCAATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGGCCAATTGGGCTTATAATGGCCCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGATATAAAGAAATTTGCAAAAGTACTTGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATCAGTGAATTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTGGTGGAAAGATATCTAACCTGCGTAGAGTCACTTATCTGGTCATGGACGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGACCAGATCGTCAAACTGTTCTATTTTCTGCTACTTTTCCCCGCCAGGTTGAAATTCTAGCTCGTAAGGTTTTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAACACAGCTAGTAGAGGTGAGGCCAGAAAATGAGAGGTTCTTCAGGCTCTTAGAATTACTTGGGGAATGGTATGAGAAGGGAAAGATGTTGATATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACAGATCGAGAATCTACAATTTCTGACTTCAAAAGCAATGTCTGCAATTTGTTGATTGCAACTAGTATTGCTGCCAGGGGTTTGGATGTCAAGGAACTCGAATTGGTTATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGACGTACAGGACGAGCTGGTCGGAAGGGTTGTGCTATCACATTTATTTCGGAGGAAGAAGCAAGATATGCACCAGATCTGGTCAAAGCTTTGGAGCTATCTGAACAAATAGTTCCTGATGACCTGAAAGCTCTTGCTGACGGGTTTATGGCAAAAGTTAATCAAGGACTTGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTGAGGAGAGCAGCCAAGAAAGCACAAGCCAGAGAATATGGGTTTGAAGAAGATAAGTCTGATTCTGAGGATGAAGATGAAGGTATTCGGAAGGCAGGAGGTGACATCTCACAGCATCCTGCTCTTGCACAGATTCTAGTTGCTGCCACCAAAGCAAACACCCCTGCAATGCCCTCTACTTCCCAGGTAATTTCAAATGGTGGATTGCCTGTTTCTTTGCCTGCTGTTCTTGGTTTCCAGAGTGCAGGAGTCATGCCTGGGACAGGGCTGCCCATTGTTCCAAGTGATGGAGCAACTCGGGCAGCATTAGCTGCTATGAACCTGCAAAATAAATTAGCAAAGATTGCTGGTGCAATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTAGGCCCAGTTTCTGAGTGGACAGGAGCTGCTATTACCACCAGGGGGCAGTATTTCCCTCCTGGCAAGGTCCCAGGATCTGGTGAACGGAAACTCTACTTGTTCATTGAGGGCCCCAGTGAACAGTCTGTCAAGAGAGCAAAAGCAGAATTGAAGCGTGTGCTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGTGCTCAACCAGGCAAATACTCTGTTGTATAA 3378 0.4387 MDKRKHKSRKEDYEGKEEDSKRSRHERDGEKTSDKGKDRSEGKHRDREKRERESRRYEREKSSDSDERFDREREKHRDKDKDKDRTRVHDEERERARDKKRERDREDRGRERRDRREKEREKDRERERDRREREREREVEKERGRIGREREKRREVDSEYSDDDSKDRERKRHKKDDDDYRGREQEKSVSKSSRQTENNEESPRKKSDNDNSDANESKPSREEELEDEHRRLDEEMEKRRRRVQEWQELRRKREEAEKEKHGEASADVPKFGKAWTLEGESDDEEGTATGMPNTAMDVDEDDKPLDKEPKDSMAVDVNNGPVTSNLLDEADGTQADEEIDPLDAFMNSMVLPEVEKLNSAVAPESSNQIADLKPKGNKDEQSNGGNPRKGSNKTIGRIIPGEESDSDYEDLEIEGDPLDEDDDEFMKRVKKTKAERLAIVDHSKIDYEPFKKNFYIEVKEIAKMTPQEVAAYRKELELKIHGKDVPKPVKSWNQIGLTSKILETIKKLNYEKPMTIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKISNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWYEKGKMLIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLVKALELSEQIVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAREYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILVAATKANTPAMPSTSQVISNGGLPVSLPAVLGFQSAGVMPGTGLPIVPSDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPVSEWTGAAITTRGQYFPPGKVPGSGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0053 1125 MobiDBLite consensus disorder prediction 1 333 - -
Lele30g0053 1125 FunFam probable ATP-dependent RNA helicase DDX17 452 702 - -
Lele30g0053 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 871 IPR027417 -
Lele30g0053 1125 Coils Coil 1089 1112 - -
Lele30g0053 1125 Coils Coil 222 259 - -
Lele30g0053 1125 MobiDBLite consensus disorder prediction 296 313 - -
Lele30g0053 1125 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 871 IPR001650 -
Lele30g0053 1125 Gene3D - 700 874 IPR027417 -
Lele30g0053 1125 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 521 699 IPR014001 -
Lele30g0053 1125 MobiDBLite consensus disorder prediction 357 409 - -
Lele30g0053 1125 CDD SF2_C_DEAD 711 841 - -
Lele30g0053 1125 SMART helicmild6 751 832 IPR001650 -
Lele30g0053 1125 Gene3D - 442 699 IPR027417 -
Lele30g0053 1125 MobiDBLite consensus disorder prediction 908 937 - -
Lele30g0053 1125 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 645 653 IPR000629 -
Lele30g0053 1125 Pfam Helicase conserved C-terminal domain 726 832 IPR001650 -
Lele30g0053 1125 CDD DEADc_DDX46 479 700 - -
Lele30g0053 1125 MobiDBLite consensus disorder prediction 1 267 - -
Lele30g0053 1125 SMART ultradead3 509 714 IPR014001 -
Lele30g0053 1125 Pfam DEAD/DEAH box helicase 515 686 IPR011545 GO:0003676|GO:0005524
Lele30g0053 1125 PANTHER RNA HELICASE 436 910 - -
Lele30g0053 1125 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 490 518 IPR014014 GO:0003724
Lele30g0053 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 701 IPR027417 -
Lele30g0053 1125 Coils Coil 108 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0053 Lele-ChrLele30 610169 613546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0053 477 852 Eukaryotic Initiation Factors Gene Family AT3G19760 32.095 3.50e-58 204