Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0047 ATGGGGAAAGGAAGAGCACCTTGCTGTGATAAAACAAAAGTCAAGAGAGGACCATGGAGTCCTGAAGAAGACCTTAAACTCATTTCCTTCATCCACAAACATGGCCATGATAACTGGAGAGCTCTTCCTAAGCTTGCAGGATTGGTGAGATGTGGGAAAAGCTGTCGTTTGAGATGGATCAACTACTTGAGGCCTGATGTGAAGCGTGGCAATTTTTCTAAGGAAGAAGAAGACACCATCATAAGGCTTCACCATGCCTTAGGAAACAAGTGGTCAAAGATTGCATCTCTTTTGCCAGGAAGAACAGACAATGAGATCAAGAACGTTTGGAACACACATCTCAAGAAAAGATTAAAACCGAATAAGCCCTCAAAATCCAATAATGTTGCTGATCTCTCATCTTCCATCACTACTACTCTGTCCTCTGATTCATCTTCTTCCTCTGAGAAAATGGATCAAGACTCAGAGAAACAAGTTCCCAATGAAGGTCCTGTCAATGGCGTCCTCACAGAGGAGGACCCAAAACAGCCACCAGCTTCATTCTCTTCTTCTGATGATCATTCATTAAAACCAGAAGATGAAGATGGACAGATTCTAGAGTCTTTGCTTAAAGACGACGAAGATCCTCTGCTTCAAATTCCAATGGATACAATGGACTTTGACATCTGGAACATTCTGGAGAATCCAGAATCCTTCCAATCAAATGATTTTCAGGTCCCAAGTGCTTCTTCTGAAGATGATGTAGACAAGAACAAGTGGTTTCGTGAATTAGAGAATGAACTTGGATTGGGAACATCATCGAAGGGATTCAACCTTGCAAGGAATATTGTTGATGACCATGCAGACATGGATTTTCTGGAATCATCATCATGGTCCTATTGGCCTGAAATTTACAATCTTTAA 903 0.4142 MGKGRAPCCDKTKVKRGPWSPEEDLKLISFIHKHGHDNWRALPKLAGLVRCGKSCRLRWINYLRPDVKRGNFSKEEEDTIIRLHHALGNKWSKIASLLPGRTDNEIKNVWNTHLKKRLKPNKPSKSNNVADLSSSITTTLSSDSSSSSEKMDQDSEKQVPNEGPVNGVLTEEDPKQPPASFSSSDDHSLKPEDEDGQILESLLKDDEDPLLQIPMDTMDFDIWNILENPESFQSNDFQVPSASSEDDVDKNKWFRELENELGLGTSSKGFNLARNIVDDHADMDFLESSSWSYWPEIYNL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0047 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lele30g0047 300 MobiDBLite consensus disorder prediction 123 148 - -
Lele30g0047 300 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lele30g0047 300 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lele30g0047 300 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lele30g0047 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 227 - -
Lele30g0047 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lele30g0047 300 SMART sant 68 116 IPR001005 -
Lele30g0047 300 SMART sant 15 65 IPR001005 -
Lele30g0047 300 CDD SANT 18 63 IPR001005 -
Lele30g0047 300 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lele30g0047 300 Gene3D - 70 159 - -
Lele30g0047 300 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lele30g0047 300 CDD SANT 71 114 IPR001005 -
Lele30g0047 300 FunFam Transcription factor RAX3 9 69 - -
Lele30g0047 300 Gene3D - 15 68 - -
Lele30g0047 300 MobiDBLite consensus disorder prediction 114 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0047 Lele-ChrLele30 563373 566066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0047 1 263 MYB Transcription Factor Family AT1G79180 45.752 2.01e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele30g0047 Myb_DNA-binding 2.6e-15 CL0123