Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0046 ATGCAGATCTTCGTCATGACTTTGAATGGAAAGACCATCACTCTCGAGGTTGAGAGCAGTGACACAATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCCGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTAGCTGATTATAACATCCAAAAGGAATCAACGCTTCACTTGGTTTGGAGGCTTAGAGGAGGAACCATGATTAAAGTGAAGACTCTAACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGAATCAAGGAAAGGGTTGAAGAAAAAGAGGGAATTCCTCCAGTGCAGCAGAGACTCATATATGCCGGTAAGCAGCTTGCAGATGACAAAACAGCTAAAGAGTACAACATTGAGGGCGGTTCTGTGCTTCACTTGGTGCTTGCATTGAGGGGTGAACCTTTGAGCTGTAAATTCATAACCAATAGTTTAGTAACTTTAGTTGCTGCAGCGTCTGCATTAGACCTTTATGTTATGTTGGGGATAAAGAATGCCCTCTCTAAGTCTTGA 567 0.4268 MQIFVMTLNGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVWRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGEPLSCKFITNSLVTLVAAASALDLYVMLGIKNALSKS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0046 188 CDD Ubl_NEDD8 79 151 IPR038738 -
Lele30g0046 188 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lele30g0046 188 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Lele30g0046 188 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lele30g0046 188 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lele30g0046 188 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lele30g0046 188 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lele30g0046 188 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Lele30g0046 188 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Lele30g0046 188 FunFam Polyubiquitin 3 1 76 - -
Lele30g0046 188 FunFam NEDD8 protein 77 154 - -
Lele30g0046 188 PANTHER UBIQUITIN 1 78 - -
Lele30g0046 188 SMART ubq_7 77 148 IPR000626 GO:0005515
Lele30g0046 188 SMART ubq_7 1 72 IPR000626 GO:0005515
Lele30g0046 188 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lele30g0046 188 SUPERFAMILY Ubiquitin-like 79 153 IPR029071 -
Lele30g0046 188 CDD Ubl_ubiquitin 1 76 - -
Lele30g0046 188 Gene3D - 78 160 - -
Lele30g0046 188 Gene3D - 1 77 - -
Lele30g0046 188 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0046 Lele-ChrLele30 542957 545092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0046 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 96.053 7.29e-48 150