Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0020 ATGACCTGTTTTCCTATATTATTTGGTAGAAGGTCGCATTCTTCAGTAAGGCTAAATCCAGACATCGAAGAAGAATTTTCCGGTCTTCACAATGTCAGACTTTATACGTACAAAGAACTACGAAATGCCACTGAAGATTTTAGTCCTATTAATAAGATTGGGGAGGGTGGTTTTGGTTCTGTTTACAAGGGACGGTTAAAAGGTGGAAAAGTTGCCGCGATTAAAGTCCTTTCAGCTGAATCAAGACAAGGGGTGAGGGAATTCTTGACAGAGATTAAGGTGATATCAGAAATAGAGCATGGAAATTTAGTTAAGCTATATGGCTGTTGTGTGGAAGGAAATCACAGAATATTGGTCTACAATTACCTCGAGAATAACAGCCTCGCACAAACCCTTATAGGTGGGCGACATAGCAGTATCCAATTCAATTGGAGAACACGGTCTAGAATATGCATTGGGGTCGCACGTGGGATTGCCTTTCTCCATGAGGAAGTAAGACCTCATATCGTTCATAGGGACATAAAAGCAAGTAACATTCTTCTTGACAAGGACCTCATACCCAAGATTTCAGATTTTGGGCTCGCTAAACTGATTCCAGCAAACATGACCCATGTTAGCACACGCGTTGCAGGAACCATAGGTTATCTTGCACCAGAGTATGCAATAGGAGGCAAGCTGACGCGAAAAGCTGATGTATACAGCTTTGGAGTCCTCCTTGTGGAGATTGTAAGTGGGAGATGTAACACAAACACACGATTACCTATTGAAGAACAGTACATTCTAGAAAGGACATGGGATCTTTACGAGCGAAAGGAATTGGTAGCACTGGTAGATGAATCGCTGAATGGGGAGTTTGATGTTGAGGAAGCTTGCAGATTTTTTAAGATTGGCCTTCTTTGCACGCAGGATGATCCCAAGGTGCGGCCGTCCATGTCATCGGTGGTGAACATGCTCACCGGCAGAATGCGTGTTGACGAGAGAAACATAACAAAACCAGCCTTGATATCTGATTTTATGGACCTCAAAGTGAGGAAAAAACCAGTGAGTAATATTGACATGGAGACTCAGGCTTCATCTTCATACCATTCATCCTCGGCCTCGTACAACCAGGATACTACCTTTTCGTCAACTGTTTCAACCGCTGCAACTGCAACCTTTACCGCACGATATGATCAAAGCATTTAA 1185 0.4295 MTCFPILFGRRSHSSVRLNPDIEEEFSGLHNVRLYTYKELRNATEDFSPINKIGEGGFGSVYKGRLKGGKVAAIKVLSAESRQGVREFLTEIKVISEIEHGNLVKLYGCCVEGNHRILVYNYLENNSLAQTLIGGRHSSIQFNWRTRSRICIGVARGIAFLHEEVRPHIVHRDIKASNILLDKDLIPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRCNTNTRLPIEEQYILERTWDLYERKELVALVDESLNGEFDVEEACRFFKIGLLCTQDDPKVRPSMSSVVNMLTGRMRVDERNITKPALISDFMDLKVRKKPVSNIDMETQASSSYHSSSASYNQDTTFSSTVSTAATATFTARYDQSI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0020 394 CDD STKc_IRAK 53 320 - -
Lele30g0020 394 Pfam Protein tyrosine and serine/threonine kinase 51 318 IPR001245 GO:0004672|GO:0006468
Lele30g0020 394 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lele30g0020 394 FunFam cold-responsive protein kinase 1 18 122 - -
Lele30g0020 394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 361 - -
Lele30g0020 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Lele30g0020 394 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g0020 394 FunFam cold-responsive protein kinase 1 123 334 - -
Lele30g0020 394 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Lele30g0020 394 SUPERFAMILY Protein kinase-like (PK-like) 26 319 IPR011009 -
Lele30g0020 394 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g0020 394 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0020 Lele-ChrLele30 272558 274750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0020 21 359 Receptor kinase-like Gene Family AT1G53430 52.353 1.37e-111 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele30g0020 PK_Tyr_Ser-Thr 1.1e-46 CL0016