Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0008 ATGTGTTCATTTGCTTCTAGCTTGAGCAAGAACCGGAGTCAGGAAGCAAGGAGACGCCACAACAGAGGTTTGGGAAACAAGAAGAAAAGATTGACCATGGGTTTTGATTCTATGCTACCTGTTGCGTACTCTTCCATCACGGAAATAGATGTAAATTCAGCTTTTGCTTTGCATCGTTATGGAAATTCGTTTTCTTCCAGGGTCACGATATCTTGGAGACCCTTTCTTGGTACATCTTTAAACACGAGAAATGCTGGGAAAGGTCAAGTTTTTCATGCTCAAAAGCTCAATTATGGACCGGTTTGTGCTTCCTTGAAGAGTAGCTTCAACGCTGGGTTGATTAAGGATGGTCTGCTTTCAAGTGAATTAGAGTTTAAGCCATCATTCGATGATTATTTGAAGGAAATGGAGTCTGCCAAAACTGTCAAGGAAATGGAGTCCTCCAGAAATGTTAGGATAAAGAAGCATGCTACCAGTACTGAAAAACAGAAGAGGAAGGAAAAGTTTATATCGAGGAAACCAAGGTTAGTAGGAGTTGAAAAAGGTAAAAAAATTGGAAAGCTTGTAGGGCGCATGGATAAAACAAATGAGTTAGGAATTGCTGAAAAAAATGGGGCATTACAAGTAGTTGAAACAGTCATGGGCAAAGAAAGCTCCTCCGTAGGTCATATTAAGCTCAGAGGACGAGGAGCTAAAAGATTTGACCTTGATTATGATGGGGAAGAAAGCAAGCTTGATATTGCTGTGAAGCAGAAAAAGGAGGCAGAGGTAATGGAAGACAGGCGGTTGGAATACCGGATTAATAGATCAAAATCAGATTCTGACAGCAATTTGATTAAAAGGGAACGTAGAAAGACAGGCAATAGCAAAGCTTCACTCAATTGGAATGGTAACTGGGGCCCCTCCATAGAGGGGGAAGTCAGCAATAAATTACATACGCTAAAGACTGCAGGAGGAAGGGATGCTACAAACAGTCAAAGCAACTCAAAAGGGAAAATGGCTATCGTAAACAAAACTTCTGTTAGCAACAATGTTATGCGCAATGGACGAAAGAAAAGCTATACAAACAATGAGAACGTGGGGAAAGAAAATGGACCGGAACATCTCAACTTGAATGGAAGCAGTAGATGTTATGATTATGACAACTTGGAGGTGGAACGAGCAGCATTTAAGACTTTTGAAGAGTTCGATGGTGCTGTCAACAAGCCCCAAGTTTCACACAAGGAAATGGAGGATAGAGTCCAAAGGCTGGCAAATTTGTTGAACGGTGCTGATATAAATATGCCTGAATGGATCTTTTCTAAGATGATGAGAAGTGCAAAGATAAAATTTAATGATTATTCTATTGTGAGGGTTATCCAAAGATTGGGAAAACTGGGAAACTGGCAGCGGGTGATACAGGTCATTGAATGGCTTCAAAGGCGTGAGCGTTTCAAATCCCATAAATTAAGGCATATATACACTGCTGCTCTTGATGCACTTGGAAAGGCAAGGAGACCCATAGAGGCACTAAACGTATTTCATGCCATGCTGGTAATGCATCAACAAATGTCCACATATCCTGATTTGGTAGCTTACCATAGTATTGCTGTCACTCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGATATCATGCGGTTGCCACCTAAGAAGAAGTTCAAAGTAGGAGCATTTGGGAACTGGGACCCTAGGCTGGAACCGGATGTCATAGTTTATAATGCCGTCCTTAATGCTTGTGTTCAGCAGAAACAGTGGGAAGGGGCTTTCTGGGTTTTACAGCAATTAAAGAAGCAACGTCAACAACCTTATGCTACAACTTATGGCCTCGCCATGGAGGTGATGTTTACATGTGGCAAGTACAATCTAGTTCATGAGTTTTTCATGAAAGTCCAGAAGTCTTCTATTCCTAATTCGTTGATATATCGAGTTCTTGTGAATACACTCTGGAAACAGGGCAAAACTGATGAGGCTATATTGGCTATGCAAGATATGGAAAGACGTGGAATTGTAGGTTCTGCTTCTCTTTATTATGACGTTGCTCGATGTCTTTGTGCAGCTGGAAGATGTAGTGAGGCACTGATGCAGATAGAGAAGATATGTAAGGCTGCAAACAAACCACTTGTAGTGACATACACGGGCTTAATTCAAGCATGTCTGGAATCTGGAAACATCCAAGATGGGGCTTATATTTTTGAAAAAATGAAGGATATTTGCTCCCCAAATCTTGTTACTTGTAACATGATGCTTAAAGCTTACCTGGAACATGGGATGTTTGAGGAAGCAAAAGAATTGTTTGAGAAGATGTCAGAAAACACAAATCATGTGAAGAGAAATTCTGATTACAAAGTTGTGGTGATACCAGATATTTACACATTCAACACCATGTTAGATGCATGTATTTTAGAGAAGAGATGGAATTATTTTAACTACGTCTACCAAAAGATGCTATACCATGGTTACCACTTCAATCCAAAACGTCATCTTCGAATGATACTGGAGGCATCAAGAGCTGGAAAGGAAGGGCCTATTGAAACGACGTGGAAGCACTTGATCCAAACAGATCGTATTATTCCAGCTACTCTGATAAAGGAAAGATTCTGTATGAAGCTAGAAAAGGATGATCATGTTGAAGCTCTCGGATGTTTCGCCAATGATCTCTCCAAAGACTTGCAGGCATTTTCTAAGCTGTCTTGGTTGAATCTATTGAAAGAAAATGCTCAACGCTTTCAGAAGGATACACTAGTTAGGTTAATGGATCATGTAAACACCCTAGTTTCCAAAAGCAGCTTGCCACGTCCAGCACTTGAAGCACTTGAAAACCTAATGCTATCTTTGAAAGAATTTTGTACCAGTGACCTTAGTCTGAATGACATCAAACGGGGTTTACTTTAG 2904 0.4056 MCSFASSLSKNRSQEARRRHNRGLGNKKKRLTMGFDSMLPVAYSSITEIDVNSAFALHRYGNSFSSRVTISWRPFLGTSLNTRNAGKGQVFHAQKLNYGPVCASLKSSFNAGLIKDGLLSSELEFKPSFDDYLKEMESAKTVKEMESSRNVRIKKHATSTEKQKRKEKFISRKPRLVGVEKGKKIGKLVGRMDKTNELGIAEKNGALQVVETVMGKESSSVGHIKLRGRGAKRFDLDYDGEESKLDIAVKQKKEAEVMEDRRLEYRINRSKSDSDSNLIKRERRKTGNSKASLNWNGNWGPSIEGEVSNKLHTLKTAGGRDATNSQSNSKGKMAIVNKTSVSNNVMRNGRKKSYTNNENVGKENGPEHLNLNGSSRCYDYDNLEVERAAFKTFEEFDGAVNKPQVSHKEMEDRVQRLANLLNGADINMPEWIFSKMMRSAKIKFNDYSIVRVIQRLGKLGNWQRVIQVIEWLQRRERFKSHKLRHIYTAALDALGKARRPIEALNVFHAMLVMHQQMSTYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRLPPKKKFKVGAFGNWDPRLEPDVIVYNAVLNACVQQKQWEGAFWVLQQLKKQRQQPYATTYGLAMEVMFTCGKYNLVHEFFMKVQKSSIPNSLIYRVLVNTLWKQGKTDEAILAMQDMERRGIVGSASLYYDVARCLCAAGRCSEALMQIEKICKAANKPLVVTYTGLIQACLESGNIQDGAYIFEKMKDICSPNLVTCNMMLKAYLEHGMFEEAKELFEKMSENTNHVKRNSDYKVVVIPDIYTFNTMLDACILEKRWNYFNYVYQKMLYHGYHFNPKRHLRMILEASRAGKEGPIETTWKHLIQTDRIIPATLIKERFCMKLEKDDHVEALGCFANDLSKDLQAFSKLSWLNLLKENAQRFQKDTLVRLMDHVNTLVSKSSLPRPALEALENLMLSLKEFCTSDLSLNDIKRGLL 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0008 967 TIGRFAM PPR: pentatricopeptide repeat domain 747 775 IPR002885 -
Lele30g0008 967 TIGRFAM PPR: pentatricopeptide repeat domain 713 739 IPR002885 -
Lele30g0008 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Lele30g0008 967 MobiDBLite consensus disorder prediction 348 368 - -
Lele30g0008 967 Pfam PPR repeat 486 511 IPR002885 -
Lele30g0008 967 Pfam PPR repeat 645 673 IPR002885 -
Lele30g0008 967 Gene3D Tetratricopeptide repeat domain 408 561 IPR011990 GO:0005515
Lele30g0008 967 Gene3D Tetratricopeptide repeat domain 562 659 IPR011990 GO:0005515
Lele30g0008 967 MobiDBLite consensus disorder prediction 1 27 - -
Lele30g0008 967 FunFam Pentatricopeptide repeat-containing protein 412 561 - -
Lele30g0008 967 MobiDBLite consensus disorder prediction 318 336 - -
Lele30g0008 967 Gene3D Tetratricopeptide repeat domain 699 859 IPR011990 GO:0005515
Lele30g0008 967 SUPERFAMILY TPR-like 559 774 IPR011990 GO:0005515
Lele30g0008 967 MobiDBLite consensus disorder prediction 271 297 - -
Lele30g0008 967 Pfam Pentatricopeptide repeat domain 569 616 IPR002885 -
Lele30g0008 967 Pfam Pentatricopeptide repeat domain 710 756 IPR002885 -
Lele30g0008 967 MobiDBLite consensus disorder prediction 317 336 - -
Lele30g0008 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Lele30g0008 967 MobiDBLite consensus disorder prediction 271 288 - -
Lele30g0008 967 PANTHER OS01G0674700 PROTEIN 59 955 IPR044645 GO:0009658
Lele30g0008 967 Coils Coil 407 427 - -
Lele30g0008 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 745 775 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0008 Lele-ChrLele30 135633 152227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0008 452 823 Glycosyltransferase AT1G05670 21.693 7.86e-14 73.9