LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g1568	ATGACCTGTTTTCCTGTATTATTTGGCAGAAGTTCACGTTCTTCAGCAAGGCTAGATCCAGGCATTGAAAAAGAATTTTCAGGTCTTCACAATGTCAGACTTTATACATACAAAGAACTACGAAATGCCACCGAAGATTTCAGTCCTATTAATAAGATTGGAGAGGGTGGTTTTGGTTCTGTTTACAAGGGACGGTTAAAAGGTGGGAAAGTTGCCGCTATTAAAGTCCTTTCAGCTGAATCAAGACAAGGGGTGAGGGAATTCTTGACGGAGATTAAGGTGATCTCAGAAATAAAGCACGGAAATTTAGTTAAGCTATATGGCTGTTGTGTGGAAGGAAATCACAGAATATTGGTCTACAATTACCTCGAGAATAACAGCCTCGCACAAACACTTATAGGTGGGCGACATAGCAGTATCCAATTCAATTGGCGAACACGGTCTAGAATATGCGTTGGGGTCGCACGTGGGATTGCCTATCTCCATGAGGAAGTAAGACCGCATATTGTTCATAGGGACATAAAAGCAAGTAACATCCTTCTTGACAAAGACCTCACGCCCAAGATTTCAGATTTTGGGCTCGCAAAACTGATTCCAGCAAACATGACCCATGTTAGCACACGTGTCGCAGGAACCATAGGTTATCTGGCACCAGAGTATGCCATTGGAGGCAGGCTAACGCGTAAAGCTGATGTATACAGTTTTGGAGTCCTCCTTGTGGAGATTGTAAGTGGGAGATGCAACACAAACACACAATTACCAATTGAACAACAGTACATTCTAGAAAGGATTCAGCACCACCGCATGAGATTTCAGGACGTGCTCTTACTTGAGTTTCTGTTGTTACAGACATGGGATCTTTATGAGAGAAAGGAATTGGTAGCACTGGTAGATCAATCGCTGAATGGGGAGTTTGATGTTGAGGAAGCTTGCAGATTTTTTAAGATTGGCCTTCTTTGCACGCAGGATGATCCCAAGGTGCGGCCGTCCATGTCTTCGGTGGTGAACATGCTCACCGGCAGAATGCCTGTGGACGAGAGGAACATAACAAAACCAGCCTTGATCTCTGATTTTATGGACCTCAAAGTGAGAAAAAAACCAGTAAGTAATATTGACATGGGGACTCAGGTTTCATCTTCTTACCATTCATCCTCGGCCTCGTACAACCAGGATACTACTTTTCCATCAACTATTTCAACCGCAGCAACTGCAACCTTCACTGCACGATATGATCGAAGCATTTAA	1245	0.4345	MTCFPVLFGRSSRSSARLDPGIEKEFSGLHNVRLYTYKELRNATEDFSPINKIGEGGFGSVYKGRLKGGKVAAIKVLSAESRQGVREFLTEIKVISEIKHGNLVKLYGCCVEGNHRILVYNYLENNSLAQTLIGGRHSSIQFNWRTRSRICVGVARGIAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGRLTRKADVYSFGVLLVEIVSGRCNTNTQLPIEQQYILERIQHHRMRFQDVLLLEFLLLQTWDLYERKELVALVDQSLNGEFDVEEACRFFKIGLLCTQDDPKVRPSMSSVVNMLTGRMPVDERNITKPALISDFMDLKVRKKPVSNIDMGTQVSSSYHSSSASYNQDTTFPSTISTAATATFTARYDRSI	414

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g1568	414	ProSiteProfiles	Protein kinase domain profile.	47	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele29g1568	414	CDD	STKc_IRAK	53	340	-	-
	Lele29g1568	414	Gene3D	Transferase(Phosphotransferase) domain 1	123	355	-	-
	Lele29g1568	414	SMART	serkin_6	47	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele29g1568	414	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	31	380	-	-
	Lele29g1568	414	ProSitePatterns	Protein kinases ATP-binding region signature.	53	75	IPR017441	GO:0005524
	Lele29g1568	414	Gene3D	Phosphorylase Kinase; domain 1	20	122	-	-
	Lele29g1568	414	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468
	Lele29g1568	414	FunFam	cold-responsive protein kinase 1	19	122	-	-
	Lele29g1568	414	Pfam	Protein kinase domain	49	336	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele29g1568	414	FunFam	cold-responsive protein kinase 1	123	354	-	-
	Lele29g1568	414	SUPERFAMILY	Protein kinase-like (PK-like)	27	339	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g1568	Lele-ChrLele29	22490702	22492837	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g1568	35	379	Receptor kinase-like Gene Family	AT1G53430	50.145	1.12e-105	333

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lele29g1568		Pkinase	3.9e-47	CL0016