LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g1539	ATGGAGTCACAAATTCCTAAACCCACAAAGGCTTTGCCACTCAACGAATCTACGAGTACTCATCCCCTTCGCACAATTCTTCCTCGTTCTCTCGCTCCTCTCTGCACTGTCTCACGCAGTTCTTCTTCTTCGCAAACAAGTACCAGCCTCAACAAGATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTAGCTGATTATAACATCCAAAAGGAATCAACTCTTCACTTGGTTTTGAGGCTTAGAGGAGGAACCATGATTAAAGTGAAGACTCTAACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGAATCAAGGAAAGGGTTGAAGAAAAGGAGGGAATTCCTCCAGTGCAGCAGAGGCTCATATATGCCGGTAAGCAGCTTGCAGATGACAAAACGGCCAAAGAGTACAACATTGAGGGAGGTTCTGTGCTTCACTTAGTGCTTGCATTGAGGGGTGGTATCCATTAA	621	0.4557	MESQIPKPTKALPLNESTSTHPLRTILPRSLAPLCTVSRSSSSSQTSTSLNKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGIH	206

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g1539	206	SUPERFAMILY	Ubiquitin-like	130	204	IPR029071	-
	Lele29g1539	206	PANTHER	UBIQUITIN	53	130	-	-
	Lele29g1539	206	ProSitePatterns	Ubiquitin domain signature.	79	104	IPR019954	-
	Lele29g1539	206	SMART	ubq_7	129	200	IPR000626	GO:0005515
	Lele29g1539	206	SMART	ubq_7	53	124	IPR000626	GO:0005515
	Lele29g1539	206	MobiDBLite	consensus disorder prediction	1	25	-	-
	Lele29g1539	206	Gene3D	-	130	206	-	-
	Lele29g1539	206	Gene3D	-	45	129	-	-
	Lele29g1539	206	CDD	Ubl_NEDD8	131	204	IPR038738	-
	Lele29g1539	206	ProSiteProfiles	Ubiquitin domain profile.	129	204	IPR000626	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g1539	Lele-ChrLele29	22221792	22223870	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g1539	131	205	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	62.667	2.03e-27	99.4

Showing 1 to 1 of 1 entries