Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1539 ATGGAGTCACAAATTCCTAAACCCACAAAGGCTTTGCCACTCAACGAATCTACGAGTACTCATCCCCTTCGCACAATTCTTCCTCGTTCTCTCGCTCCTCTCTGCACTGTCTCACGCAGTTCTTCTTCTTCGCAAACAAGTACCAGCCTCAACAAGATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTAGCTGATTATAACATCCAAAAGGAATCAACTCTTCACTTGGTTTTGAGGCTTAGAGGAGGAACCATGATTAAAGTGAAGACTCTAACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGAATCAAGGAAAGGGTTGAAGAAAAGGAGGGAATTCCTCCAGTGCAGCAGAGGCTCATATATGCCGGTAAGCAGCTTGCAGATGACAAAACGGCCAAAGAGTACAACATTGAGGGAGGTTCTGTGCTTCACTTAGTGCTTGCATTGAGGGGTGGTATCCATTAA 621 0.4557 MESQIPKPTKALPLNESTSTHPLRTILPRSLAPLCTVSRSSSSSQTSTSLNKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGIH 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1539 206 SUPERFAMILY Ubiquitin-like 130 204 IPR029071 -
Lele29g1539 206 PANTHER UBIQUITIN 53 130 - -
Lele29g1539 206 ProSitePatterns Ubiquitin domain signature. 79 104 IPR019954 -
Lele29g1539 206 SMART ubq_7 129 200 IPR000626 GO:0005515
Lele29g1539 206 SMART ubq_7 53 124 IPR000626 GO:0005515
Lele29g1539 206 MobiDBLite consensus disorder prediction 1 25 - -
Lele29g1539 206 Gene3D - 130 206 - -
Lele29g1539 206 Gene3D - 45 129 - -
Lele29g1539 206 CDD Ubl_NEDD8 131 204 IPR038738 -
Lele29g1539 206 ProSiteProfiles Ubiquitin domain profile. 129 204 IPR000626 GO:0005515
Lele29g1539 206 Pfam Ubiquitin family 55 126 IPR000626 GO:0005515
Lele29g1539 206 Pfam Ubiquitin family 131 202 IPR000626 GO:0005515
Lele29g1539 206 ProSitePatterns Ubiquitin domain signature. 155 180 IPR019954 -
Lele29g1539 206 CDD Ubl_ubiquitin 53 128 - -
Lele29g1539 206 FunFam Polyubiquitin 3 53 128 - -
Lele29g1539 206 FunFam NEDD8 protein 129 206 - -
Lele29g1539 206 PRINTS Ubiquitin signature 63 83 IPR019956 -
Lele29g1539 206 PRINTS Ubiquitin signature 84 104 IPR019956 -
Lele29g1539 206 PRINTS Ubiquitin signature 105 126 IPR019956 -
Lele29g1539 206 SUPERFAMILY Ubiquitin-like 37 128 IPR029071 -
Lele29g1539 206 ProSiteProfiles Ubiquitin domain profile. 53 128 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1539 Lele-ChrLele29 22221792 22223870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1539 131 205 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.667 2.03e-27 99.4