Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1538 ATGGCCAGAGGCTTGACTAGTTGGAGTGAGTCTTTATTGGATCACTATTTTTATCGTATTGGATCACTGATTTGGGTTATGAATTTGAGTGCATTGGAATATGAAATTATTTGGTTTTGTGTGTGGTATTTCATCATGAATTTGAGTGCTTTACGAATTGAACATGAAGATAGACTTCAACAACAGAATAGAGGTCTTGAACAAGATCTGAATAAGGTTGGCACAGATGACAAAAATGACCCTACAAATGAGACAAATGACCCTACATTGGAAGGGCGAACAAGAGATAGAGATTGTCTCTTCTGCAAATTTCGCTTCATCTTCGTCGTCGGAGAAGAAAATAAAATAATAATGGGGAAAGGAAGAGCACCTTGCTGTGATAAAACAAAAGTCAAGAGAGGACCATGGAGTCCTGAAGAAGACCTTAAACTCATTTCCTTCATCCAGAAACATGGCCATGACAATTGGAGAGCTCTTCCTAAGCTTGCAGGATTGGTGAGATGTGGGAAAAGCTGCCGTTTGAGATGGATCAACTACTTGAGGCCTGATGTGAAGCGTGGCAATTTTTCTAAGGAAGAAGAAGACACCATCGTAAGGCTTCACCATGCCTTGGGAAACAAGTGGTCAAAGATTGCATCTCATTTGCCAGGAAGAACAGACAACGAGATCAAGAACGTTTGGAACACACATCTCAAGAAAAGATTAAAACCTAAGCCTTCAAAATCAAACAATAATGTTGCTGATCTCTCATCATCCATCACTACTACTGCTACTACTTTGTCCTCTGATTCATCTTCTTCCTCTGAGAAAATGGATCAAGATTCAGAGAAACAAGTTCCCAATGAACAACACATCAATGGCGCTGTTACAGAGGAACCGAAAGAATCTCCAGCTTCATTCTCTTCTTCTGATGATCATTCATCAAAACCAGAAGAAGAAGATGAACATATTTTAGAGACTCTGCTTAAAAACGACGACGATCCTCTGCTCCAAATTCCAATGGACACGTTGGATCTTGACATCTGGAATATTCTGGAGAATCCAGAATCCTTCCAATCAAATGATTTTCAGTTCCCAAGTGTTTCTTCTGAAGATGATGCAGACAAGAACAAGTGGTTTCGTGAATTAGAGAATGAACTTGGATTGGGAACATCATCAGAGGGATTGAACAACCTAGCCAGGAATGCTGATGATCAAGCAGGCATGGATTTTCTTGAATCATCATGGTCCTCTTGGCCTGAAATTGAAATTTACAATCTTTAA 1263 0.3975 MARGLTSWSESLLDHYFYRIGSLIWVMNLSALEYEIIWFCVWYFIMNLSALRIEHEDRLQQQNRGLEQDLNKVGTDDKNDPTNETNDPTLEGRTRDRDCLFCKFRFIFVVGEENKIIMGKGRAPCCDKTKVKRGPWSPEEDLKLISFIQKHGHDNWRALPKLAGLVRCGKSCRLRWINYLRPDVKRGNFSKEEEDTIVRLHHALGNKWSKIASHLPGRTDNEIKNVWNTHLKKRLKPKPSKSNNNVADLSSSITTTATTLSSDSSSSSEKMDQDSEKQVPNEQHINGAVTEEPKESPASFSSSDDHSSKPEEEDEHILETLLKNDDDPLLQIPMDTLDLDIWNILENPESFQSNDFQFPSVSSEDDADKNKWFRELENELGLGTSSEGLNNLARNADDQAGMDFLESSWSSWPEIEIYNL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1538 420 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 121 346 - -
Lele29g1538 420 SUPERFAMILY Homeodomain-like 131 227 IPR009057 -
Lele29g1538 420 MobiDBLite consensus disorder prediction 240 268 - -
Lele29g1538 420 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Lele29g1538 420 Gene3D - 133 185 - -
Lele29g1538 420 MobiDBLite consensus disorder prediction 69 91 - -
Lele29g1538 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 235 IPR017930 -
Lele29g1538 420 MobiDBLite consensus disorder prediction 70 91 - -
Lele29g1538 420 Coils Coil 56 76 - -
Lele29g1538 420 FunFam Transcription factor RAX3 126 186 - -
Lele29g1538 420 SMART sant 185 233 IPR001005 -
Lele29g1538 420 SMART sant 132 182 IPR001005 -
Lele29g1538 420 CDD SANT 135 180 IPR001005 -
Lele29g1538 420 CDD SANT 188 231 IPR001005 -
Lele29g1538 420 Pfam Myb-like DNA-binding domain 133 180 IPR001005 -
Lele29g1538 420 Pfam Myb-like DNA-binding domain 186 231 IPR001005 -
Lele29g1538 420 MobiDBLite consensus disorder prediction 230 315 - -
Lele29g1538 420 Gene3D - 187 278 - -
Lele29g1538 420 ProSiteProfiles Myb-like domain profile. 181 231 IPR001005 -
Lele29g1538 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 180 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1538 Lele-ChrLele29 22203926 22208313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1538 118 237 MYB Transcription Factor Family AT1G56160 86.667 7.05e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele29g1538 Myb_DNA-binding 1e-14 CL0123