Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1534 ATGGACGAGGGAAAGCGTAAATCTAGGAAGGAAGAGGATTCAAAGAGGAGTCGCCGTGAACGAGACCGTGAGAAGACTAGTGAAAAAGGCAAGGATAGAAGTGAAGGGAGGCATAGGGATAGAGAGAAGAGGGATCGTGAGAGTCGACGCTATGAGAGAGAGAAAAGCAGCGATTCTGATGAAAGATTTGATAGAGAAAGAGAGAAGCATAGAGATAAGGATAAGGATAGGACCCGAGTTCATGATGAAGAAAGAGAAAGAGCTCGAGACAAGAAAAAGGAAAGAGACAGGGAAGATAGGGAAAGGGAGAAGAGAGATAGGAGGGAGAAAGAAAGGGAGAAGGATAGAGAAAGGGAACGGGTTAGGAGAGAGCGTGAAAGGGAGAGGGAAGTTGAAAAAGAAAGGGGGAGGAGAGGAAGAGAGAGGGAGAAGCATAGGGAAGTTGATAGTGAGTACAGTGATGATGATTCCAGGGATAGAGAAAGAAAGCGGCACAAGAAAGATGATGATGATTACAAGGGTAGAGAGCAGGAGAAGAGTGTCAGCAAGTCAAGTAGGCAAACTGAGAATAATGAAGAGAGCCCAGGGAAAAAGAGTGACAATGACAACTCAGACGCCAATGAAAGCAAGCCAAGCCGTGAGGAGGAGCTAGAGGATGAACATAGGAGGTTGGATGAAGAGATGGAAAAGAGGAGAAGGAGGGTTCAGGAATGGCAAGAGCTGAGGAGGAAGAGAGAAGAAGCTGAGAGAGAAAAGCACGGTGAAGCAAGTGCTGATGTACCCAAGTTTGGAAAGGCCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACCACTACAGGGAAGCCAAATACAGCTATGGATGTGGATGAAGATGACAAACCTTTGGATAAAGAACCTATGGATTCGATGGCAGTAGATGTTAGTAATGGACCTGTTACATCTAATTTACCGGATGAAGCTGATGGAACTCAAGCAGATGAGGAAATTGATCCATTGGATGCTTTCATGAATTCTATGGTTTTGCCTGAAGTTGAAAAGCTGAATAGTGCTGTGGCTCCTGAATCTTCTAGTCAAACTACTGACTTAAAGCCCAAGGGTAACAAGGACCAACAAAGTAATGGTGGGAACCCTAGGAAAGGTTCTAATAAATCAATTGGGAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGAAGACCTAGAAATTGAGGGTGATCCATTAGATGAAGATGATGATGAATTCATGAAAAGAGTAAAGAAGACCAAAGCTGAGAGACTTGCTATTGTTGACCACTCAAAGATTGATTATAAGCCATTCAAGAAAAATTTTTATATTGAAGTGAAGGAGGTTGCCAAGATGACTCCTCAAGAAGTTGCAGCATACAGGAAGGAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGAATCAGATTGGTCTCACTAGCAAAATTTTGGAGACAATAAAGAAGCTTAATTATGAAAAGCCAATGACTATTCAAGCTCAGGCCCTCCCCGTGATTATGAGTGGTAGAGATTGCATAGGAATTGCTAAAACTGGGTCAGGAAAAACCCTTGCTTTTGTTCTGCCAATGCTGAGGCACATCAAGGATCAGCCACCTGTTGTTGCAGGAGATGGGCCGATTGGGCTTATAATGGCCCCTACAAGGGAGCTTGTCCAACAGATTCACAGTGATATAAAGAAATTTACAAAAGTACTTGGTCTCAGGTGCGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATCAGTGAATTGAAACGTGGTACCGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTGGCGGGAAGATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGACGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGACCAGATCGTCAAACTGTTCTCTTTTCTGCTACTTTTCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAACACAGCTAGTAGAGGTGAGGCCAGAAAATGAGAGGTTCTTCAGGCTCTTAGAATTACTTGGGGAATGGTATGAGAAGGGAAAGATTTTGATATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCAAAGGATCAGACAGATCGAGAATCCACAATTTCTGACTTCAAAAGCAATGTCTGCAATTTGTTGATTGCAACTAGTATTGCTGCCAGGGGTTTAGATGTCAAGGAGCTCGAATTGGTTATTAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGACGTACAGGACGAGCTGGTCGGAAGGGTTGTGCTATCACATTTATTTCGGAGGAAGAAGCAAGATATGCACCAGATCTGGTTAAAGCTTTGGAGCTATCTGAACAGATAGTTCCTGATGACCTGAAAGCTCTTGCTGATGGGTTTATGGCAAAAGTTAATCAAGGACTTGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTGAGGAGGGCAGCCAAGAAAGCACAAGCCAGAGAATATGGGTTTGAAGAAGATAAGTCTGATTCTGAGGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGACATCTCACAGCATCCTGCTCTTGCACAGATTCTAGTTGCTGCCACCAAAGCAAACACCCCTGCAATGCCCTCTAATTCCCAGGTAATTTCAAATGGTGGATTGCCTGTTTCATTGCCTGCTGTTCTTGGTCTCCAGACTGCAGGAGTCATGCCTGGGACAGGGCTTCCCATGGTTCCAAGTGATGGAGCAACTCGGGCGGCATTAGCTGCCATGAACCTGCAAAATAAATTAGCAAAGATTGCTGGCGCAATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTAGGCCCAGTTTCTGATTGGACTGGAGCTGCTATTACCACAAGGGGGCAGTATTTCCAACCTGGCAAGGTCCCAGGAGCTGGTGAACGGAAACTCTACTTGTTCATTGAGGGCCCCACTGAACAGTCTGTCAAGAGAGCAAAAGCAGAATTGAAGCGTGTGCTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGTGCTCAACCAGGCAAATACTCTGTTGTATAA 3354 0.4431 MDEGKRKSRKEEDSKRSRRERDREKTSEKGKDRSEGRHRDREKRDRESRRYEREKSSDSDERFDREREKHRDKDKDRTRVHDEERERARDKKKERDREDREREKRDRREKEREKDRERERVRREREREREVEKERGRRGREREKHREVDSEYSDDDSRDRERKRHKKDDDDYKGREQEKSVSKSSRQTENNEESPGKKSDNDNSDANESKPSREEELEDEHRRLDEEMEKRRRRVQEWQELRRKREEAEREKHGEASADVPKFGKAWTLEGESDDEEGTTTGKPNTAMDVDEDDKPLDKEPMDSMAVDVSNGPVTSNLPDEADGTQADEEIDPLDAFMNSMVLPEVEKLNSAVAPESSSQTTDLKPKGNKDQQSNGGNPRKGSNKSIGRIIPGEESDSDYEDLEIEGDPLDEDDDEFMKRVKKTKAERLAIVDHSKIDYKPFKKNFYIEVKEVAKMTPQEVAAYRKELELKIHGKDVPKPVKSWNQIGLTSKILETIKKLNYEKPMTIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLVKALELSEQIVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAREYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILVAATKANTPAMPSNSQVISNGGLPVSLPAVLGLQTAGVMPGTGLPMVPSDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPVSDWTGAAITTRGQYFQPGKVPGAGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1534 1117 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 513 691 IPR014001 -
Lele29g1534 1117 MobiDBLite consensus disorder prediction 352 382 - -
Lele29g1534 1117 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 482 510 IPR014014 GO:0003724
Lele29g1534 1117 FunFam probable ATP-dependent RNA helicase DDX17 444 694 - -
Lele29g1534 1117 SMART ultradead3 501 706 IPR014001 -
Lele29g1534 1117 Pfam Helicase conserved C-terminal domain 718 824 IPR001650 -
Lele29g1534 1117 Gene3D - 692 866 IPR027417 -
Lele29g1534 1117 MobiDBLite consensus disorder prediction 397 413 - -
Lele29g1534 1117 Coils Coil 1081 1104 - -
Lele29g1534 1117 Coils Coil 214 251 - -
Lele29g1534 1117 Pfam DEAD/DEAH box helicase 507 678 IPR011545 GO:0003676|GO:0005524
Lele29g1534 1117 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 702 863 IPR001650 -
Lele29g1534 1117 MobiDBLite consensus disorder prediction 900 929 - -
Lele29g1534 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 840 IPR027417 -
Lele29g1534 1117 SMART helicmild6 743 824 IPR001650 -
Lele29g1534 1117 MobiDBLite consensus disorder prediction 1 259 - -
Lele29g1534 1117 Gene3D - 434 691 IPR027417 -
Lele29g1534 1117 Coils Coil 81 134 - -
Lele29g1534 1117 CDD SF2_C_DEAD 703 833 - -
Lele29g1534 1117 CDD DEADc_DDX46 471 692 - -
Lele29g1534 1117 MobiDBLite consensus disorder prediction 348 413 - -
Lele29g1534 1117 MobiDBLite consensus disorder prediction 1 331 - -
Lele29g1534 1117 PANTHER RNA HELICASE 428 902 - -
Lele29g1534 1117 MobiDBLite consensus disorder prediction 287 302 - -
Lele29g1534 1117 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 637 645 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1534 Lele-ChrLele29 22167253 22170606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1534 469 844 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 7.93e-58 203