Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1491 ATGCCAGTGTTGTTCTCTGCCCGGTTGGTTCTGCTAGTTGGAGAGACATTGCCCTTGCGAAGTTTCTTGCCCACTTCTAGTACTTCTTGTTTTCATAGCAGTGCCCGTTGTTTAAGTCGGATAGAGCCCCAACATGCTCCCCTTACTCCCTTAAGCATTGGTTTGAATAATGAAAATGAAACTAGGAAGAATAACAAAGTCAACAAATTGAAGCAATTGGGTTCCCCCTCTTTAGATTCAAAGAGCAGAGCAAAGACCATTGGTTTCAATAAAATTAGAGAAGTTGGAGCCAAAAAGAAGCAGCAGATTGAATCTGCTCCCTTTGCTGCCAAGTCTTTTTCTGAACTTGGCCTCCCTCATTTGTTGGCTGAGAGATTGGAAAATGAAGGTTTTCCGGTTCCAACTGAAGTGCAGTCTGCAGCAATTCCTACAATTTTGAATAATCATGATGTCATAATTCAATCTTACACAGGATCAGGGAAAACATTGGCTTATCTTCTTCCCATACTATCTAATGTTGGCCCTTTGAGGAACAAAACTTCTGAAGGTATGCAGATAGTGAGGGAGTTTGAGAAGATACTCGGACTTGCTAACAAAAAGGCTGTTCAACAACTTGTGGGAGGCGCGAACCGATCCAGGCAAGAAGAAGCTCTCAAGAAAAATAAACCGGCCATCGTTGTTGGCACACCCGGTAGAATTGCAGAGCTCAGTGCAGCCGGGAAACTTCACACCCATGGCTGTCGTTATTTGGTCCTGGATGAAGTTGATGAACTCCTGTCGTTTAACTTTCGGGAGGACATGCACCGGATACTAGAACATGTGGGGATAAGATCAGGAGCTGACCCACGAGGCCAAAATGGTACAGCTCCTAGACGTGTTGAGCGACAAACAATCATGGTGTCTGCAACTGTTCCATTTTCTGTTGTCAGGGCAGCCCGGAGCTGGGCGCATGAACCGCTTCTTGTCCAAGCCAATAAACATAAAGTTGATACCTTGAGAAGGTGTATTCATGCACTAGACGCCAAATATGTTATAGCTTTCATGAACCATATCAAGCAACTTAAGGATGTTGTCTTCAAGCTAGAGGCACGTGGGATGAAAGCTGCAGTGTTACATGGGGATCTTGGGAAACTTGCTTGGTCAACAACTCTGAAAAAGTTCAAGAATGGTGAGGTGAGAGTGCTTATGACCAATGAATTATCGGCACGGGGATTGGACATAGCAGAATGTGATCTCGTGGTTAATTTGGACTTACCCACAGACTCAATTCATTATGCACACCGAGCTGGCAGGACCGGCCGGCTTGGGAGGTCTGGTACAGTGCTTTCAATATGTGAAGAACCAGAAGTGTTTGTTGTGAAGAAACTGCAAAAGCAGCTTGGGGTACCAATAGCGAGCTGTGATTTTGTGGAGAGAAAGCTACTTGTTAAAGAAGAGAAAATGCTAAATACTGTGAGATGA 1461 0.4456 MPVLFSARLVLLVGETLPLRSFLPTSSTSCFHSSARCLSRIEPQHAPLTPLSIGLNNENETRKNNKVNKLKQLGSPSLDSKSRAKTIGFNKIREVGAKKKQQIESAPFAAKSFSELGLPHLLAERLENEGFPVPTEVQSAAIPTILNNHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTSEGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRYLVLDEVDELLSFNFREDMHRILEHVGIRSGADPRGQNGTAPRRVERQTIMVSATVPFSVVRAARSWAHEPLLVQANKHKVDTLRRCIHALDAKYVIAFMNHIKQLKDVVFKLEARGMKAAVLHGDLGKLAWSTTLKKFKNGEVRVLMTNELSARGLDIAECDLVVNLDLPTDSIHYAHRAGRTGRLGRSGTVLSICEEPEVFVVKKLQKQLGVPIASCDFVERKLLVKEEKMLNTVR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1491 486 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 475 IPR001650 -
Lele29g1491 486 SMART ultradead3 130 332 IPR014001 -
Lele29g1491 486 SMART helicmild6 355 436 IPR001650 -
Lele29g1491 486 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 322 IPR014001 -
Lele29g1491 486 Gene3D - 322 486 IPR027417 -
Lele29g1491 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 456 IPR027417 -
Lele29g1491 486 CDD SF2_C_DEAD 322 445 - -
Lele29g1491 486 CDD DEADc 122 323 - -
Lele29g1491 486 Pfam DEAD/DEAH box helicase 135 308 IPR011545 GO:0003676|GO:0005524
Lele29g1491 486 Pfam Helicase conserved C-terminal domain 330 436 IPR001650 -
Lele29g1491 486 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 89 324 - -
Lele29g1491 486 Gene3D - 55 321 IPR027417 -
Lele29g1491 486 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1491 Lele-ChrLele29 21783186 21784871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1491 90 444 Eukaryotic Initiation Factors Gene Family AT3G13920 25.907 4.06e-37 139