Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1490 ATGGCTACCACCACATCCGCCGCCGCCGCTTCTCCGCGCCAGCTTTCCCAGAAGGAGGCTGACATTCAGATGATGTTGGCAGCCGAGGTCCACCTCGGAACCAAAAACTGCAACTTCCAAATGGAGCGATATGTGTTCAAGCGCCGCAATGATGGTATCTACATCATTAATCTTGGAAAGACATGGGAGAAGCTTCAACTTGCTGCCAGGGTTATTGTTGCCATTGAGAACCCTCAAGATATTATTGTTCAGTCTGCTAGGCCTTATGGTCAAAGAGCTGTTCTCAAGTTTGCTCAATACACTGGTGCCCATGCACTTGCTGGGAGACACACCCCAGGAACCTTCACTAATCAGCTCCAAACCTCTTACAGTGAGCCTCGCCTTCTAATTCTTACTGACCCAAGAACCGACCATCAGCCCATCAAAGAAGCTGCTCTTGGAAATATACCAACTATTGCTTTTTGTGACACTGATTCTCCTATGCGATATGTTGACATTGGGATTCCTGCCAACAACAAGGGGAAACACAGCATTGGTTGCCTTTTCTGGCTCTTAGCAAGGATGGTACTGCAGATGCGTGGCACTATTCGTCCAGGGCTCAAGTGGGATGTGATGGTGGATCTGTTCTTCTATAGAGAACCTGAGGAGGCCAAGCAACTAGAGGAAGAGGAGACGCCTGCTGTCCAAGACTATGCTGCTGCAGATTTTGGCGCCGGTATTGGTGCCATTGCTGATGGCCAGTGGCCTGTTGCAGCTGATTCATCATGGACTGAACCAGTACAACAACCTATTCCGGCAGTTCCTGGTGTCAGCTGGACCCCAGAAGCTGCAGGGGATTGGGAACCCGTCCCAGCTCCACAAGCTCCTCAAGTTCCTGTTCCTGGAACCGGAGTTGAGAACGTTACTGCTACCGGCTGGGACTAA 924 0.5065 MATTTSAAAASPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQLEEEETPAVQDYAAADFGAGIGAIADGQWPVAADSSWTEPVQQPIPAVPGVSWTPEAAGDWEPVPAPQAPQVPVPGTGVENVTATGWD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1490 307 FunFam 40S ribosomal protein SA 21 227 - -
Lele29g1490 307 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 Pfam Ribosomal protein S2 123 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 Hamap 40S ribosomal protein SA [rps-0]. 9 259 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lele29g1490 307 MobiDBLite consensus disorder prediction 283 307 - -
Lele29g1490 307 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele29g1490 307 PANTHER 40S RIBOSOMAL PROTEIN SA 10 290 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele29g1490 307 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Lele29g1490 307 Gene3D - 21 227 - -
Lele29g1490 307 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele29g1490 307 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1490 Lele-ChrLele29 21771542 21773604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1490 6 288 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.684 1.80e-154 431