Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1483 ATGGCAAATCAGCTCTATCTCTATGCCTATAGCCCTACCTACGGAGGAGCTTCGCCGCCACCCGCCGCCGCCGCCGCCACAACCACTGCCAGTTCCCTTTCCTCCAGCCGATATCTTTCTACCGATATGTATTTTCCTCAACGTAAAGATTCCATTCTTCGATATTCCCCCTACGCCGCTTCCGATGCCGACATTGGCCCACCTGGTGTTTCTACTAGACTCTCCAGCGCCGTCTCCGGGCAAACATCTTCCACCGCTTCCCAGTTTCTATCTCAAGCTTCTTGGCCTGCTGCTATTGCTGCAGCAAATGTTGGGTCGTCTGCATTGGAGTCGATTCTTAACATGAAGCGCTCTTCTGATGCGCTCTACCATCCAACTGTTTTGCAAACCCATAATACACTTGGGCAAAGTGAAGCTTGGTATTCTACAAATTCATTAACAAAGCGCCCTAGGTACGAGAGTACAAGCAATTTGCCTATATACCCACAGAGGCCAGGAGAGAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATGCCTGCATATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAGATGTTACAAGTGAGACTCTTCCTGAGAGACCAGGAATACCAGATTGTCCGTACTTTCTTAAAACTAACAGATGCAAGTTTGGTTCAAGGTGCAAGTTTAATCATCCCAAGCATTTGTTTGAAAATGCTGATATTTCTACCTTACCTGAGAGGCCTTCGGAGCCTCCATGCGCGTTCTACATGAAAACTGGAAAATGCAAGTTTGGTTATACCTGTAAATTTCATCACCCAAAAGACATTCAGATTCAGCTATCTGAAGAACAGAATGGTGCTTTTGAGCAGACCCATTTGACCCCTAATATAAAGGGGGATTTAGGGGATACACAATCATCTAATATTTTTAGTTCGTACACTGCTCCTGTATTGCATAATAGCAAAGGGCTTCCCGTAAGGCTGGGTGAAGTAGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAATATGGTGCTACATGCCGCTACAATCATCCTGATAGGAATGTAATTAATCCACCTGCTTCTGCGTTAGGTCATTCTGTTTTGACATCATCAGCTGCTAATCTAAACTTTGGAATTGTAAATCCAGCTGCATCAATTTATCAATCTGTTGACCCCAGATTGTCAAATGCAACGTCCGAGGTGGGAATGACTATCTATCCTCAACGACCAGGACAGATTGAGTGTGATTACTATATGAAGACTGGAGAGTGTAAATTTGGAGAAAGATGCAAGTTCCATCACCCAATTGACCGATCAGCACCATTACAGTCAAATTCAGCCGCACAACAAGCTGTTAAACTCACTCTTGCAGGATTACCCAGGAGAGAGGGTGCTGTACTCTGTCCATATTATTTGAAAACTGGCACCTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCTCCTCCTGGAGAAGTTATGGAGCTGGCAAAGTCACAAGGAGCAAATGATACTGATGAAGGAGAGGAAGTCGGAGCTGATGAAAAACAAGCTGATTCTGTTCAGGAAAAACAATGA 1611 0.4488 MANQLYLYAYSPTYGGASPPPAAAAATTTASSLSSSRYLSTDMYFPQRKDSILRYSPYAASDADIGPPGVSTRLSSAVSGQTSSTASQFLSQASWPAAIAAANVGSSALESILNMKRSSDALYHPTVLQTHNTLGQSEAWYSTNSLTKRPRYESTSNLPIYPQRPGEKDCAHYMLTRTCKFGDACIFDHPIWVPEGGIPDWKEVPDVTSETLPERPGIPDCPYFLKTNRCKFGSRCKFNHPKHLFENADISTLPERPSEPPCAFYMKTGKCKFGYTCKFHHPKDIQIQLSEEQNGAFEQTHLTPNIKGDLGDTQSSNIFSSYTAPVLHNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPASALGHSVLTSSAANLNFGIVNPAASIYQSVDPRLSNATSEVGMTIYPQRPGQIECDYYMKTGECKFGERCKFHHPIDRSAPLQSNSAAQQAVKLTLAGLPRREGAVLCPYYLKTGTCKFGATCKFDHPPPGEVMELAKSQGANDTDEGEEVGADEKQADSVQEKQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1483 536 MobiDBLite consensus disorder prediction 501 536 - -
Lele29g1483 536 SUPERFAMILY CCCH zinc finger 259 284 IPR036855 GO:0046872
Lele29g1483 536 SUPERFAMILY CCCH zinc finger 340 364 IPR036855 GO:0046872
Lele29g1483 536 SMART c3hfinal6 256 283 IPR000571 GO:0046872
Lele29g1483 536 SMART c3hfinal6 215 242 IPR000571 GO:0046872
Lele29g1483 536 SMART c3hfinal6 164 191 IPR000571 GO:0046872
Lele29g1483 536 SMART c3hfinal6 473 500 IPR000571 GO:0046872
Lele29g1483 536 SMART c3hfinal6 420 447 IPR000571 GO:0046872
Lele29g1483 536 SMART c3hfinal6 336 363 IPR000571 GO:0046872
Lele29g1483 536 ProSiteProfiles Zinc finger C3H1-type profile. 473 501 IPR000571 GO:0046872
Lele29g1483 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 423 446 IPR000571 GO:0046872
Lele29g1483 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 283 IPR000571 GO:0046872
Lele29g1483 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 477 500 IPR000571 GO:0046872
Lele29g1483 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 362 IPR000571 GO:0046872
Lele29g1483 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 242 IPR000571 GO:0046872
Lele29g1483 536 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 166 190 IPR000571 GO:0046872
Lele29g1483 536 ProSiteProfiles Zinc finger C3H1-type profile. 420 448 IPR000571 GO:0046872
Lele29g1483 536 SUPERFAMILY CCCH zinc finger 422 449 IPR036855 GO:0046872
Lele29g1483 536 FunFam Zinc finger CCCH domain-containing protein 37 322 369 - -
Lele29g1483 536 ProSiteProfiles Zinc finger C3H1-type profile. 256 284 IPR000571 GO:0046872
Lele29g1483 536 ProSiteProfiles Zinc finger C3H1-type profile. 336 364 IPR000571 GO:0046872
Lele29g1483 536 SUPERFAMILY CCCH zinc finger 220 242 IPR036855 GO:0046872
Lele29g1483 536 FunFam Zinc finger CCCH domain-containing protein 37 120 201 - -
Lele29g1483 536 PANTHER PROTEIN PHOSPHATASE RELATED 323 378 - -
Lele29g1483 536 ProSiteProfiles Zinc finger C3H1-type profile. 164 192 IPR000571 GO:0046872
Lele29g1483 536 FunFam zinc finger CCCH domain-containing protein 37 418 514 - -
Lele29g1483 536 SUPERFAMILY CCCH zinc finger 477 500 IPR036855 GO:0046872
Lele29g1483 536 Gene3D - 162 247 - -
Lele29g1483 536 Gene3D - 316 368 - -
Lele29g1483 536 Gene3D - 386 452 - -
Lele29g1483 536 Gene3D - 248 294 - -
Lele29g1483 536 Gene3D - 453 511 - -
Lele29g1483 536 ProSiteProfiles Zinc finger C3H1-type profile. 215 243 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1483 Lele-ChrLele29 21725793 21733237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1483 161 536 C2H2 Transcription Factor Family AT3G02830 33.505 1.57e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele29g1483 zf-CCCH 8.3e-11 CL0537