Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1480 ATGCCAGGAAGTGGTCAAGTGACAGTTCCTCCAGGTTTCCGATTTCACCCAACAGATGAAGAACTTCTTTACTATTACCTCAGGAAGAAGGTCTCTTACGAAGCCATTGAACTTGACGTCATCAGAGAAGTTGATCTTAACAAACTTGAGCCCTGGGATCTCAAAGAGAAGTGTAGGATTGGATCGGGGCCACAAAACGAGTGGTATTTCTTCAGCCAAAAAGACAAGAAGTACCCAACAGGGACAAGAACAAATAGGGCAACTACAGCTGGGTTTTGGAAAGCCACAGGAAGGGACAAGGCCATTTATCTCACTAACTCCAAGAGGATTGGCTTGAGAAAAACCCTTGTATTCTACACTGGTCGTGCTCCTCACGGCCTAAAGACCGATTGGATCATACATGAGTATCGTCTCGACGAAAATGATGACCTCCACGTTCAGGAAGATGGATGGGTAGTGTGTAGGGTTTTCAAGAAGAAGAACCTCAACAGAGGTTACCAGACACCAGAAATGGAAAAGGAAGAGTACTTAGCTTACCAAATGAGAACAACAAAAAGTGGATCAACCCATCAGCAGGTATTAGATCATCATCATCACATGCAAGAACTCTATGATGATCATCATCATAAGAATAACTATAGCCAGCTTGATGGATCAATACGCCTACCACAATTGTTCAGCCCTGAATCCGCAGCAGTACTATCCGCCGCAGGCAGTTCTTCTGAAATAGTCGAGTGCTCTCAGAACTTGTTGAAGCTCACAAACACAAGTAGTGGACTCAATCTTAATCTCAATCATTATAATGACGATCACTGGTCATTCTTGGACAAGCTTCTTGCTTCACAACACTACCACCACCACAGATACATGCCTTCTAATTCACATCTTGATCATCATGCTTCTTCTGTGGCTTCTTCAACCCAGAAATTCCCAGCTGTTCATTACCTTGGCTGTGACTCTACTCGTGACATTCTCAGGTTCTCTAAGTAG 990 0.4374 MPGSGQVTVPPGFRFHPTDEELLYYYLRKKVSYEAIELDVIREVDLNKLEPWDLKEKCRIGSGPQNEWYFFSQKDKKYPTGTRTNRATTAGFWKATGRDKAIYLTNSKRIGLRKTLVFYTGRAPHGLKTDWIIHEYRLDENDDLHVQEDGWVVCRVFKKKNLNRGYQTPEMEKEEYLAYQMRTTKSGSTHQQVLDHHHHMQELYDDHHHKNNYSQLDGSIRLPQLFSPESAAVLSAAGSSSEIVECSQNLLKLTNTSSGLNLNLNHYNDDHWSFLDKLLASQHYHHHRYMPSNSHLDHHASSVASSTQKFPAVHYLGCDSTRDILRFSK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1480 329 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Lele29g1480 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 225 - -
Lele29g1480 329 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Lele29g1480 329 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Lele29g1480 329 FunFam NAC domain-containing protein 18 163 - -
Lele29g1480 329 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1480 Lele-ChrLele29 21685717 21687820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1480 1 329 NAC Transcription Factor Family AT1G79580 51.596 7.79e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele29g1480 NAM 2.9e-36 No_clan