Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1430 ATGGCTTTATCCTCTTCCCTTTTCTCACCACCCCATCTTCTTTCCAATCACACTACAAAATCCATTTCAACTTCTTCAAGATTCTCTAATCACCTTCTGAAATCTGTCTTTACACAACCCTTTGTCAAATCGACGCCTTCTCTGGTAGTTACAACACCCAGACACTACCGGAGACCCTTTGCTGTTGCAGAAGAAACTGTTGTCACTACTTCCCCGGACCCGAAATCCGACGCCGCCAGGAAGCTCTATATTGGGAACATTCCGCGCAATATCGATAACAATGAGCTCACCCAGATTGTTGAAGAGCATGGTGCTGTTGAGAGAGCAGAGGTTATGTATGACAAATACTCTGGAAGGAGTCGTCGCTTTGCATTTGTTATAATGAAGACGGTTGCGGATGCAAATGCAGTAATTGAGAAGCTAAATGGCACTGAAATTGGAGGGCGTGAAATCAAAGTAAATATAACAGAAAAACCTTTGCAAACAGTTGATGTATCTGTTCTCCAGGCAGACGAATCTGCATTCGTTGACAGTCCCCACAAAGTATATGTAGGAAATCTTGCCAAAACAGTAACAACAGATGTACTTAAAGACTTCTTCTCTTCAAGTGGAAATGTTCTTAGTGCCAAGGTTTCGCGTGTTCCTGGGACCTCAAAATCCACTGGTTTTGGTTTCGTCTCATTTTCTTCAGCTGAGGATGTTGAAGCTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGGCAACGAATTCGAGTGAACAAGGCGTAA 771 0.428 MALSSSLFSPPHLLSNHTTKSISTSSRFSNHLLKSVFTQPFVKSTPSLVVTTPRHYRRPFAVAEETVVTTSPDPKSDAARKLYIGNIPRNIDNNELTQIVEEHGAVERAEVMYDKYSGRSRRFAFVIMKTVADANAVIEKLNGTEIGGREIKVNITEKPLQTVDVSVLQADESAFVDSPHKVYVGNLAKTVTTDVLKDFFSSSGNVLSAKVSRVPGTSKSTGFGFVSFSSAEDVEAAISSFNNSLLEGQRIRVNKA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1430 256 FunFam 30S ribosomal protein 2, chloroplastic 167 256 - -
Lele29g1430 256 Gene3D - 165 256 IPR012677 -
Lele29g1430 256 PANTHER OS02G0815200 PROTEIN 11 255 - -
Lele29g1430 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 256 IPR000504 GO:0003723
Lele29g1430 256 SUPERFAMILY RNA-binding domain, RBD 71 158 IPR035979 GO:0003676
Lele29g1430 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Lele29g1430 256 SUPERFAMILY RNA-binding domain, RBD 174 256 IPR035979 GO:0003676
Lele29g1430 256 SMART rrm1_1 81 154 IPR000504 GO:0003723
Lele29g1430 256 SMART rrm1_1 181 254 IPR000504 GO:0003723
Lele29g1430 256 Gene3D - 61 164 IPR012677 -
Lele29g1430 256 CDD RRM_HP0827_like 81 158 - -
Lele29g1430 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 252 IPR000504 GO:0003723
Lele29g1430 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1430 Lele-ChrLele29 20974058 20977216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1430 67 256 Eukaryotic Initiation Factors Gene Family AT1G22760 27.604 2.44e-11 61.6