Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1423 ATGAGTGTTATGTATAGTCCAAGTGTTTTAAATTACTCAGATGGAGAGCTTCGGAGAAACCCAGAAATGGATTCAATTAACCACTTGAATTCTGGATTAATGAGGTACAGTTCTGCTCCAAGCTCATTTCTGGAAAGCCTTGTTCAGAATGATGCAGCTTCTAGAAGCATAGATCATCATCATCAGAATCCATCTTCTTCAAGTTCAGAAATGGAAGCTATGTTGGCAAAGTTGGTTTCTTCATCATCAAACAATGGATGGATCAAGCAGGAAGAAAGAGGGGACTCTGTTTCAGAGGGACACAATGGGTATAATAATTCTAATTATGGTTCTCAGATAGTTTACCAATCTCAGACTCAGCAAGTTCAACACTTTCCAAATGGGTCTTTCGGTTCTTCTTCTGGGAATGCTTTTGATGGCTCATTCAATTCATCTGAGTCCAAAATTAGGTCTAATAATAATAATCTCGTTAGACAGAAAAGCTCCCCTGCTGGTCTGTTCAACAATTTCTCAGTTGAAAATGGTTTTGCAACGTGGAGAGATGCGGGAAGCTTTAAATCCTGTGATCATGTCTCAAACGGCCAAGCTTCTACTACATCAGCTAGGGCATCTTCTTGTTCAAGAGAATTGCCTGATATAGCAGAAGATGGGAATGAAACCCTAGAAGAAGCAACTTGTGTTGAAATTGAAAGTAGAAGAAATATGAGAAATGACAAAAATGGCAACAACACTAATGAATGTTACATTCCCAGCTTCACAAGTGACTTCTGGGATTCTCCTTCATTCAATGACACTAAAACAGCCAGTGGCAATGATGAACTCATGTTTTCTACTTCAAATGGTTTTGAAACTCAGAATGCTGATTTTGGATATAATCAGAAAGTTGGTTTGACTCATCATTTGAGTCTTCCTAGTTCTTCAACAAAGTCAAAGATAAGTGCAATTGAGAAGTTTCTTCAAGTTCAAGGATCTGTTCCTTGTAAGATTCGAGCTAAACGAGGTTTCGCCACTCACCCGCGAAGCATTGCAGAGAGGGAAAGAAGAACAAGAATCAGTGAAAGAATAAAGAAGTTGCAAGATCTCTTTCCAAAATCTGAAAAGCAAACAAGCACAGCAGATATGCTGGATTTAGCAGTTGATTATATCAAAGACTTGCAGAAACAAGTTCAGATGCTCACAGATACAAAAGCAAAGTGCAAGTGTTGA 1206 0.3856 MSVMYSPSVLNYSDGELRRNPEMDSINHLNSGLMRYSSAPSSFLESLVQNDAASRSIDHHHQNPSSSSSEMEAMLAKLVSSSSNNGWIKQEERGDSVSEGHNGYNNSNYGSQIVYQSQTQQVQHFPNGSFGSSSGNAFDGSFNSSESKIRSNNNNLVRQKSSPAGLFNNFSVENGFATWRDAGSFKSCDHVSNGQASTTSARASSCSRELPDIAEDGNETLEEATCVEIESRRNMRNDKNGNNTNECYIPSFTSDFWDSPSFNDTKTASGNDELMFSTSNGFETQNADFGYNQKVGLTHHLSLPSSSTKSKISAIEKFLQVQGSVPCKIRAKRGFATHPRSIAERERRTRISERIKKLQDLFPKSEKQTSTADMLDLAVDYIKDLQKQVQMLTDTKAKCKC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1423 401 FunFam Transcription factor bHLH130 family 336 401 - -
Lele29g1423 401 Pfam Helix-loop-helix DNA-binding domain 341 386 IPR011598 GO:0046983
Lele29g1423 401 SMART finulus 341 391 IPR011598 GO:0046983
Lele29g1423 401 Coils Coil 382 401 - -
Lele29g1423 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 385 IPR011598 GO:0046983
Lele29g1423 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 397 IPR036638 GO:0046983
Lele29g1423 401 Gene3D - 337 401 IPR036638 GO:0046983
Lele29g1423 401 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1423 Lele-ChrLele29 20942777 20944802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1423 23 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.430 9.14e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele29g1423 HLH 1.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1423 29 20942777 20944802 Lele31g0159 31 1539866 1542046 hybridization
Lele29g1423 29 20942777 20944802 Lele32g1247 32 13439654 13441769 hybridization