LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g1416	ATGGTTCAGATTCAGAAAACGGAGAAGGAAGAGACCGAGTTCAAGGTTCCTGAAACAATCACCCCTTGCGTCAACAACTGTGGTGTTACAGGAAATCCGGCCACCAATAATATGTGTCAGAAGTGCTTCGCCGCCACCGCCGCTGCCGTTTCCTCAGCCACAACCTCCTCTACCGGGATTTCTGCTCCTTCTAAATATTCCGACGACAAAAGTTCTAAATCCGCACCGTCTCGCTCGCCAAAGAGGTCGCATCCGTCTGATGAGGAGCCAACACAGAATATATCATTAGATCGGACGAAATCCGACGAGACGACGCCGTCTGAAGCCAAGCGGGTGGTGAATCGATGCTCTGGGTGCCGAAGGAAGGTCGGGTTGACCGGATTCCGATGCCGGTGTGGAGAATTGTTCTGCGCTGAGCACCGGTACTCCGATCGACACGACTGCAGTTACGACTACAAAGCCGCCGGACGTGTGGCGATCGCGAGGGAAAATCCGGTGGTAAAAGCGGCGAAGATCGTGAAGGTTTGA	528	0.536	MVQIQKTEKEETEFKVPETITPCVNNCGVTGNPATNNMCQKCFAATAAAVSSATTSSTGISAPSKYSDDKSSKSAPSRSPKRSHPSDEEPTQNISLDRTKSDETTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGRVAIARENPVVKAAKIVKV	175

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g1416	175	FunFam	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	3	91	-	-
	Lele29g1416	175	PANTHER	AN1-TYPE ZINC FINGER PROTEIN	21	174	-	-
	Lele29g1416	175	MobiDBLite	consensus disorder prediction	53	107	-	-
	Lele29g1416	175	Pfam	A20-like zinc finger	22	43	IPR002653	GO:0003677\|GO:0008270
	Lele29g1416	175	Gene3D	-	6	90	-	-
	Lele29g1416	175	MobiDBLite	consensus disorder prediction	53	70	-	-
	Lele29g1416	175	ProSiteProfiles	Zinc finger AN1-type profile.	110	156	IPR000058	GO:0008270
	Lele29g1416	175	SMART	AN1_Zf_4	116	153	IPR000058	GO:0008270
	Lele29g1416	175	FunFam	Zinc finger AN1-type containing 6	88	171	-	-
	Lele29g1416	175	SMART	A20_3	20	44	IPR002653	GO:0003677\|GO:0008270
	Lele29g1416	175	Gene3D	-	91	171	IPR035896	-
	Lele29g1416	175	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	23	63	-	-
	Lele29g1416	175	SUPERFAMILY	AN1-like Zinc finger	97	169	IPR035896	-
	Lele29g1416	175	ProSiteProfiles	Zinc finger A20-type profile.	17	51	IPR002653	GO:0003677\|GO:0008270
	Lele29g1416	175	MobiDBLite	consensus disorder prediction	71	107	-	-
	Lele29g1416	175	Pfam	AN1-like Zinc finger	116	153	IPR000058	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g1416	Lele-ChrLele29	20898130	20898657	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g1416	10	175	C2H2 Transcription Factor Family	AT3G52800	39.645	5.19e-32	111

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele29g1416	29	20898130	20898657	Lele31g0166	31	1591093	1591957	hybridization
	Lele29g1416	29	20898130	20898657	Lele32g1240	32	13386315	13387191	hybridization