Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1399 ATGACAGATCCTCAGTCTTGGTTCAACTTCATCCCTCTTCTTCATCCTCCTCATCACTGCTCTTCCTTTACTACTACTACTACTTCTCATCAATCCAACGCCTGTAATAATTCCTTATACCCTCTTCATCATCATGCTCAGTACTCTAATAATAATCACTGCACATCATCATCTTCATCTTCCATTATTCAATACAAAAGCTCTTCAGGTAGTTCCTCCACCACTTTAGGCCATCATCCTCCAAATTCCCCTCCTCTCAAAGAAGCCCTGCCTCTCATCAACAATTTAAGCCTCACAACATCAAGTGAAAAACCCTCAAAAAGAGCCCTAGAAGAGGAAGATGAAGAGAAGGATGAGAGAATGGAGAAAGAATATGAAGAAGACGACGAGGAAGATGATGATGATAGAGGAACTGTGATTGTTGCCCTAGGAATAGGGCTTCCTACTAGTATGGACACTCCTTTTTCTTTTTCTTCTTCTTCTTCTTCAAGCAGTCAGATCTCAAATTCTGTTGAAATGGTTGAAAAAGAGGAACTTGGTTTGGTTTCTGGATACCCTTTGGAGAGATTAAACAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGCCCTACTCGGTTCTCTTGCCCTCTATGCTTAAAGACTTTCAATAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAGAGGAGCAGATTCTCTAAAAGGGACACAACCATCGGGAATGCTAAGGTTACCATGTTATTGTTGTGCACCAGATTGCAAGCACAACATTGAGCATCCACGAGCCAGGCCTCTGAAGGACTTCAGGACTCTGCAGACTCACTACAAGAGAAAGCATGGAATCAAACCCTACCCGTGCCGTAAATGCGGCAAGCCGTTCGCCGTCAAAGGCGACTGGCGGACTCACGAGAAGAACTGCGGCAAGCTCTGGTACTGTCTTTGTGGCTCTGACTTTAAGCACAAAAGGTCTCTCAAAGATCACGTCAAGGCCTTTGGCCATGGCCATGCAGATTCTAATAATTGCTTGCATAATAATAATGAAGAAGACGAACCAGCTTCTGAGATTGAACAAGATGGTGATAACTCCTCCATGTGA 1125 0.4329 MTDPQSWFNFIPLLHPPHHCSSFTTTTTSHQSNACNNSLYPLHHHAQYSNNNHCTSSSSSSIIQYKSSSGSSSTTLGHHPPNSPPLKEALPLINNLSLTTSSEKPSKRALEEEDEEKDERMEKEYEEDDEEDDDDRGTVIVALGIGLPTSMDTPFSFSSSSSSSSQISNSVEMVEKEELGLVSGYPLERLNKGQYWIPTPSQILIGPTRFSCPLCLKTFNRYNNLQMHMWGHGSQYRRGADSLKGTQPSGMLRLPCYCCAPDCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYPCRKCGKPFAVKGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHVKAFGHGHADSNNCLHNNNEEDEPASEIEQDGDNSSM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1399 374 FunFam Zinc finger protein WIP2 263 345 - -
Lele29g1399 374 SUPERFAMILY beta-beta-alpha zinc fingers 204 232 IPR036236 -
Lele29g1399 374 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Lele29g1399 374 SMART c2h2final6 320 343 IPR013087 -
Lele29g1399 374 SMART c2h2final6 294 314 IPR013087 -
Lele29g1399 374 SMART c2h2final6 210 232 IPR013087 -
Lele29g1399 374 MobiDBLite consensus disorder prediction 349 374 - -
Lele29g1399 374 Gene3D Classic Zinc Finger 209 232 - -
Lele29g1399 374 MobiDBLite consensus disorder prediction 52 80 - -
Lele29g1399 374 Coils Coil 107 131 - -
Lele29g1399 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 237 IPR013087 -
Lele29g1399 374 MobiDBLite consensus disorder prediction 52 136 - -
Lele29g1399 374 MobiDBLite consensus disorder prediction 115 136 - -
Lele29g1399 374 PANTHER ZINC FINGER PROTEIN WIP2 50 370 IPR043584 GO:0003700|GO:0010468
Lele29g1399 374 Gene3D Classic Zinc Finger 292 341 - -
Lele29g1399 374 SUPERFAMILY beta-beta-alpha zinc fingers 278 314 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1399 Lele-ChrLele29 20780973 20784156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1399 175 374 C2H2 Transcription Factor Family AT3G57670 75.622 3.78e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele29g1399 None None None