LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g1390	ATGATGGGGAGGGACAAAATGATGAAGAACAACAATAACAGTAATGTTAATAAGAGCAAGCTGAGGAAAGGGCTGTGGTCGCCGGAGGAAGACGAGAAGCTGATAAGGTACATGGTGACGAATGGACAAGGTTGTTGGAGTGACATTGCCAGAAACGCCGGACTTCTTCGCTGTGGCAAAAGTTGTCGTCTTCGTTGGATCAATTACCTCAGACCTGACCTCAAACGTGGTGCCTTTTCCCCTCATGAAGAACACCTCATCATTCATCTTCACTCTCTTCTTGGCAACAGATGGTCTCAGATTGCTGCACGTCTTCCTGGGAGAACTGACAATGAGATTAAGAATTTCTGGAACTCTACATTGAAGAAAAGGTTCAAAAGTGACAACAACAATTCCTCATCTTCATCACCAAACAACTCATCATCGTCGATGACATCCTCTTCATCAGAACCTAAAAACCATGCATTGATCAGTGGGAACTCAAGTATGAACATCGACCCATTAATGACCACGTCATCATCGTCCTTGTCCACCATGCAAGTCCCTATCATTTTCGGAGATCAGTTAGCTTCCGACAGTACCTTTTTCCCATTGAATTATCATCATCATCATCTTGACATGAACAATATTGAAGGAACTGGTAATTTCCCTTTATTACCCGCTGCAGAAGTTGGCAACATAGAAGAAGGGCTTTATAATAATGGAGATTATGGGACAATACTACTGGATCCTATTAATATTGAGGACAATAATAATAGCTTCCCAAATTTCGATGATGTTATTAGTGTGAAAAGTCACTACAACAACTTCAACAATAGTTGCTTCAATTACACTAATGATCATCATCATCAAATAATGCATCGGAGCTCATCAAGTAAAGTAGATCACGAAGATCAGGGCTTGTTTGGGTTTGGAAACAATGAGGACTTAGCAGTGGGAGATCAATGGGATTTGGAAGGTCTGATGCAAGACATGTCTTCTTTTCCCTTCCATGATTTTTCCAAGTTGGCTTAG	1014	0.4122	MMGRDKMMKNNNNSNVNKSKLRKGLWSPEEDEKLIRYMVTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGAFSPHEEHLIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTLKKRFKSDNNNSSSSSPNNSSSSMTSSSSEPKNHALISGNSSMNIDPLMTTSSSSLSTMQVPIIFGDQLASDSTFFPLNYHHHHLDMNNIEGTGNFPLLPAAEVGNIEEGLYNNGDYGTILLDPINIEDNNNSFPNFDDVISVKSHYNNFNNSCFNYTNDHHHQIMHRSSSSKVDHEDQGLFGFGNNEDLAVGDQWDLEGLMQDMSSFPFHDFSKLA	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g1390	337	Gene3D	-	77	152	-	-
	Lele29g1390	337	FunFam	Myb transcription factor	78	125	-	-
	Lele29g1390	337	Gene3D	-	20	76	-	-
	Lele29g1390	337	SMART	sant	75	123	IPR001005	-
	Lele29g1390	337	SMART	sant	22	72	IPR001005	-
	Lele29g1390	337	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lele29g1390	337	CDD	SANT	26	70	IPR001005	-
	Lele29g1390	337	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	18	70	IPR017930	-
	Lele29g1390	337	MobiDBLite	consensus disorder prediction	126	163	-	-
	Lele29g1390	337	ProSiteProfiles	Myb-like domain profile.	18	70	IPR001005	-
	Lele29g1390	337	SUPERFAMILY	Homeodomain-like	21	117	IPR009057	-
	Lele29g1390	337	CDD	SANT	78	121	IPR001005	-
	Lele29g1390	337	ProSiteProfiles	Myb-like domain profile.	71	121	IPR001005	-
	Lele29g1390	337	FunFam	MYB transcription factor	20	76	-	-
	Lele29g1390	337	PANTHER	MYB DOMAIN PROTEIN 55	13	295	-	-
	Lele29g1390	337	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	71	125	IPR017930	-
	Lele29g1390	337	MobiDBLite	consensus disorder prediction	7	21	-	-
	Lele29g1390	337	Pfam	Myb-like DNA-binding domain	76	120	IPR001005	-
	Lele29g1390	337	Pfam	Myb-like DNA-binding domain	23	70	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g1390	Lele-ChrLele29	20670761	20672538	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g1390	4	333	MYB Transcription Factor Family	AT3G08500	48.718	1.46e-78	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele29g1390		Myb_DNA-binding	7.3e-13	CL0123