Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1385 ATGTGCAGCGGTCCAGATAAATCAAAATCCTCTTCAACTTTATCTTCATCTACTCTAGAAGGCGCAACTAACATCAAAGACATGAAAAAGCTAACTGTTCACACAGAAGATTCTTTTTCCAGCTTACTGGAACTTGCTGCTAACAATGATGTTGAAGGTTTTAAGCTACTGCTAGATAGGGATGTTTCTTCAATAAATGAAGTTGGGATTTGGTATTGTCGCCAAATTGGGTCAAAGCAAATTATCCTTGACGATAGAACTCCATTAATGGCTGCTGCAACCTATGGTAGTATGGATGTTCTCAAGCTTATACTCTCTTATCCAGAGGCCAATGTTAATTTCACGTGTGGGATAAGCAAGATTACTGCCCTTCACTGTGCTGCTTCAGGCGGATCTAATAATGCGGTTGATGTTGTGAAGCTTCTTTTAGAAGCTGGTGCTGATCTTACTTGCAAGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCATCCGAAGCTGCGAGTCATGAGAGCAATACTTGAAGAACTTCTTTCTGATAGTGCGTTTAATGACTCCACTGGTGACTGCTCTATTCCAGTGCCTGTTAATTCATCAAGTCCTGGTTTACCTGCCCATTTATTTTCTCCCGAGAATGGATTACCATCCTCTCCTTCAGGCTCTCCTTCTTCTCCAGTGGCCTCAAAGTTCCCTGATACCCCTGTTAGCTCTACCTCGGAGAAGAAGGAGTATCCAATTGATCCATCACTTCCTGACATAAAAAACAGCATTTATGCAACAGATGAGTTTCGCATGTTCTCATTCAAGGTCCGTCCTTGCTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCAGGAGAGAATGCTCGTAGGAGAGACCCCAGGAAATTCCATTACAGCTGTGTGCCTTGCCCTGATTTTCAGAAGGGGGCTTGTAGGCGAGGGGATATGTGTGAATATGCACATGGAGTATTTGAATGCTGGCTACACCCTGCTCAGTATCGCACTCGGCTCTGCAAAGATGGCACAAACTGTAACAGAAGGGTGTGCTTTTTTGCTCACACAGCAGAAGAGTTGCGTCCACTTTATGTGTCCACTGGATCTGCTGTCCCTTCTCCACGAGCATCTGCCTCTGCTCCCAATGTCATGGACATGGCTGCTGCAATGAACCTGTTGCCTGGTTCTCTTTCATCTGTGTCTTCTATGTCACCATCTCACTTTACCCAGCCGATGTCTCCATCTGGTAATGGCATCTCACATTCATCTGGAGCCTGGCCACAGCCCAATGTGCCAGCCCTTCATCTTCCTGGAATTAATCTTCAATCTAGTCGCTTGAGATCTTCTCTAAGTGCTCGTGACATTCCACCACAAGACTTGAACATGTTGCCAGAATTTGATGGCCAGCAACACCTCTTGAATGATATGGGCTGTTTCTCCCAGCCCCGTCCTGGTGCTGTTGCTTTGAACCGATCTGGTCGGTCCAAGACACTAACTCCATCTAATCTTGAAGAGCTATTTTCTAATGAAATTTCTTCATCTCCTCGGTATTCTGATCCAGCAGCGGGTTCTGTTTTTTCTCCCACACACAAATCTGCTGTTCTCAATCAGTTTCAACAGATTCAAAGTATGCTATCACCAATAAATACAAATGTTTTATCTCCTAAGCATGCTGAGCATCCTCTATTGCAGGCTCCATTTGGTGCGTCTTCTCCTGGAAGGATGTCGCCCAGAAGTGTGGATCCAATATCTCCCATGAGCTCTCGGTTATCTCCATTTGCTCAGCGTGAGAAACAACAGCAGCAGCAACAGCTGCGAAGTCTTAGTTCAAGGGAACTTGGTTCCAAAATTCCTGCTTCAGCTGTTGGTTCTCCTGGTAACTCATGGTCTAATTGGGGATCTCCTACTGGGAAAGTTGATTGGTCAATGAATGGAGATGAATTGGGTAGATTGCGAAAATTGTCTTCATTTGATCACGGGAACAATGGGGAAGAGCCTGATCTATCTTGGGTTCAGTCCCTCGTCAAGGAATCCCCACCTGAGATGATGAAGGAGAAGCGTGCAGCTTCTGGTCCAATGGCATCTGCGGAAAAACTGACTTCAATATCTCAAGTTGAATCCGTTGATAATTCTGTTGTAGGAGCTTGGCTTGAGCAAATGCAGCTGGATCAGCTTGCTGTCTAA 2199 0.4507 MCSGPDKSKSSSTLSSSTLEGATNIKDMKKLTVHTEDSFSSLLELAANNDVEGFKLLLDRDVSSINEVGIWYCRQIGSKQIILDDRTPLMAAATYGSMDVLKLILSYPEANVNFTCGISKITALHCAASGGSNNAVDVVKLLLEAGADLTCKDANGNRPVDVIVVHPKLRVMRAILEELLSDSAFNDSTGDCSIPVPVNSSSPGLPAHLFSPENGLPSSPSGSPSSPVASKFPDTPVSSTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFQKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTAEELRPLYVSTGSAVPSPRASASAPNVMDMAAAMNLLPGSLSSVSSMSPSHFTQPMSPSGNGISHSSGAWPQPNVPALHLPGINLQSSRLRSSLSARDIPPQDLNMLPEFDGQQHLLNDMGCFSQPRPGAVALNRSGRSKTLTPSNLEELFSNEISSSPRYSDPAAGSVFSPTHKSAVLNQFQQIQSMLSPINTNVLSPKHAEHPLLQAPFGASSPGRMSPRSVDPISPMSSRLSPFAQREKQQQQQQLRSLSSRELGSKIPASAVGSPGNSWSNWGSPTGKVDWSMNGDELGRLRKLSSFDHGNNGEEPDLSWVQSLVKESPPEMMKEKRAASGPMASAEKLTSISQVESVDNSVVGAWLEQMQLDQLAV 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1385 732 FunFam Zinc finger CCCH domain-containing protein 66 262 330 - -
Lele29g1385 732 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Lele29g1385 732 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Lele29g1385 732 MobiDBLite consensus disorder prediction 207 249 - -
Lele29g1385 732 Gene3D - 304 367 - -
Lele29g1385 732 MobiDBLite consensus disorder prediction 586 619 - -
Lele29g1385 732 Pfam CCCH-type zinc finger 309 329 IPR041367 -
Lele29g1385 732 PANTHER UNKEMPT FAMILY MEMBER 44 683 IPR045234 -
Lele29g1385 732 MobiDBLite consensus disorder prediction 568 640 - -
Lele29g1385 732 MobiDBLite consensus disorder prediction 626 640 - -
Lele29g1385 732 Pfam Ankyrin repeats (3 copies) 45 153 IPR002110 GO:0005515
Lele29g1385 732 ProSiteProfiles Zinc finger C3H1-type profile. 309 331 IPR000571 GO:0046872
Lele29g1385 732 MobiDBLite consensus disorder prediction 408 429 - -
Lele29g1385 732 SUPERFAMILY Ankyrin repeat 33 178 IPR036770 -
Lele29g1385 732 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Lele29g1385 732 SMART c3hfinal6 304 330 IPR000571 GO:0046872
Lele29g1385 732 SMART c3hfinal6 339 362 IPR000571 GO:0046872
Lele29g1385 732 MobiDBLite consensus disorder prediction 214 245 - -
Lele29g1385 732 Gene3D - 12 198 IPR036770 -
Lele29g1385 732 SMART ANK_2a 84 114 IPR002110 GO:0005515
Lele29g1385 732 SMART ANK_2a 37 67 IPR002110 GO:0005515
Lele29g1385 732 SMART ANK_2a 119 151 IPR002110 GO:0005515
Lele29g1385 732 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1385 Lele-ChrLele29 20600425 20602623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1385 1 729 C2H2 Transcription Factor Family AT5G12850 53.567 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele29g1385 Ank_2 1e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1385 29 20600425 20602623 Lele31g0189 31 1864062 1866266 hybridization
Lele29g1385 29 20600425 20602623 Lele32g1220 32 13166309 13168414 hybridization