Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1382 ATGTCTCTCTTGAGGTTGCAGACAGAGAGGCAGAGAGAGAATGGGTCTCATTTCAATGTGATTGAGCCACTAAATCCTAAATCTTCTGCGTCTTCTTCTTTTGCTGCTTCGCAACCTGGAGTAAGTTTCTTGAGAGTTTTTTCTGCTCCTAAATCATGCAAAATTCTCTTGGAAAACTTGGGAAGGATGCCAGGAAAACCTGATGTGGAAGATAGGAGGTATGAAGGAGGAGGGCAGATTCAGTTTCAATCAGGAATTTACTCTCAGCCATGGTGGCGTGGTGTAGAGGAAAATGCCTCTAAATTATCTTCATCAGTATTTCAGATAAGTGGTTCAGTCATGGATTCATCAGCAGCTAATGAAGGATCAGATAAACTTGATTTTCGTGGGAATGCCAACAAAGAGCACCAAAACAACAAACATGTCATGTCCTCTTCACCACATGCCATGCACCTGGGTTCAAATTCCCAAGTCGGTCGTTCTATTGTTTTAACCTCTTACCCATACTCAGATGCACAGTGCGCTGGAATCTTGACATCTCATGGGTCTCAAAATATGTTGTATGGAATGCATCATGCTAGAATGCTTTTGCCACTTGAGATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATCTTAAGGCGAAGACAGTCACGTGCTAAGGCAGAGCTCGAAAGGAAAGTTATAAAAGTTAGAAAGTTAATGAAATACTCCATATCTTCACGAATCTCGTCACTTACATGCTATGAGAAGGGCAAGAGGGTGTGGGGGCCGCTTTCTGAATACAAAGAAGCTTGA 810 0.4247 MSLLRLQTERQRENGSHFNVIEPLNPKSSASSSFAASQPGVSFLRVFSAPKSCKILLENLGRMPGKPDVEDRRYEGGGQIQFQSGIYSQPWWRGVEENASKLSSSVFQISGSVMDSSAANEGSDKLDFRGNANKEHQNNKHVMSSSPHAMHLGSNSQVGRSIVLTSYPYSDAQCAGILTSHGSQNMLYGMHHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELERKVIKVRKLMKYSISSRISSLTCYEKGKRVWGPLSEYKEA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1382 269 ProSitePatterns NF-YA/HAP2 subunit signature. 207 227 IPR018362 GO:0003677|GO:0016602
Lele29g1382 269 Gene3D - 202 257 - -
Lele29g1382 269 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 204 246 IPR001289 GO:0003700|GO:0006355
Lele29g1382 269 ProSiteProfiles NF-YA/HAP2 family profile. 202 237 IPR001289 GO:0003700|GO:0006355
Lele29g1382 269 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 114 246 IPR001289 GO:0003700|GO:0006355
Lele29g1382 269 SMART cbf3 201 269 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1382 Lele-ChrLele29 20536162 20539343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1382 83 237 CCAAT-HAP2 Transcription Factor Family AT5G12840 35.484 2.13e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele29g1382 CBFB_NFYA 3.2e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1382 29 20536162 20539343 Lele31g0195 31 1926849 1931395 hybridization
Lele29g1382 29 20536162 20539343 Lele32g1215 32 13109032 13112551 hybridization