Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1372 ATGGAGGAAGTTCAGGCGACTCAAACTCAACCGCTGGGTGAAGAAGATCAAAATGAAATAATTACCGAAAGTTCTGCATTTGTTAAAGGGGAACCTCCACAGGAAGTGAGTAATCCTCCTAAAGTGGATTCAGAGGTTGAAATCCTCCATGAGAATGTTACAAAACAAATAATTAAGGAAGGTCATGGTCAGAAGCCTACCAAATATTCAACATGCTTTTTTCACTACAGGGCATGGACAGAAAGCTCACAGCACAAGTTTGAAGATACATGGGATGAGCAACGACCCATTGAAATGATATTGGGAAAAGAAAAGAAAGAAATGGCTGGCTTGGCTATTGGTGTGGCTAGCATGAAAGCTGGAGAACGTGCCTTACTACGTGTGGGCTGTGAACTAGGATATGGAAAGGAAGGCAGCTTCTCTTTTCCAAATGTTCCACCTATGGCAGATTTAGTTTATGAAGTTGAGCTCATAGGCTTTGATGAAACAAAAGAAGGGAAACCTCGCAGTGATATGACTGTTGAGGAAAGGATTGGTGCAGCAGATCGTAGAAAGATGGATGGAAATGCTTTGTTTAAAGAGGAGAAATTGGATGAGGCTATGCAACAGTATGAAATGGCCATAGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGGGATATGGCTTTGGCTGTAAAGAATCCTTGCCACCTTAACATGGCTGCATGTCTGATTAAGCTGAACCGTTATGACGAAGCCATAGGACAATGTAGCCTTGTGTTGAGTGAGGATGAAAACAATGTGAAGGCATTATTTAGACGAGGTAAGGCTAGGGCAGCACTAGGCCAAACAGATGCTGCCAGGGAGGATTTTCTGAAAGCAAAGAAGCATGCCCCAGAAGATAAAGCAATAGCAAAAGAATTGCGATTGCTTGCTGAACACGACAAGGCTATTTATCAAAAGCAAAAAGAGATATATAAAGGAATGTTTGGACCAAGGCCTGAACCAAAACCCAAGCAAACGAATTTTCTGATTCTCATTTGGCAGTGGTTGCTGGCAGTTTTTCATCACCTCATCATGTTATTCAAGTGTGAAAGGCGAAAATCTGACTAA 1107 0.4182 MEEVQATQTQPLGEEDQNEIITESSAFVKGEPPQEVSNPPKVDSEVEILHENVTKQIIKEGHGQKPTKYSTCFFHYRAWTESSQHKFEDTWDEQRPIEMILGKEKKEMAGLAIGVASMKAGERALLRVGCELGYGKEGSFSFPNVPPMADLVYEVELIGFDETKEGKPRSDMTVEERIGAADRRKMDGNALFKEEKLDEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYDEAIGQCSLVLSEDENNVKALFRRGKARAALGQTDAAREDFLKAKKHAPEDKAIAKELRLLAEHDKAIYQKQKEIYKGMFGPRPEPKPKQTNFLILIWQWLLAVFHHLIMLFKCERRKSD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1372 368 Gene3D Tetratricopeptide repeat domain 163 294 IPR011990 GO:0005515
Lele29g1372 368 FunFam Peptidylprolyl isomerase 166 294 - -
Lele29g1372 368 Pfam Tetratricopeptide repeat 267 297 IPR019734 GO:0005515
Lele29g1372 368 Gene3D - 37 162 IPR046357 GO:0003755
Lele29g1372 368 MobiDBLite consensus disorder prediction 1 42 - -
Lele29g1372 368 MobiDBLite consensus disorder prediction 1 24 - -
Lele29g1372 368 ProSiteProfiles TPR repeat profile. 266 299 IPR019734 GO:0005515
Lele29g1372 368 SUPERFAMILY FKBP-like 31 160 - -
Lele29g1372 368 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 69 161 IPR001179 GO:0003755
Lele29g1372 368 SMART tpr_5 181 214 IPR019734 GO:0005515
Lele29g1372 368 SMART tpr_5 266 299 IPR019734 GO:0005515
Lele29g1372 368 SMART tpr_5 232 265 IPR019734 GO:0005515
Lele29g1372 368 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 96 340 IPR039663 -
Lele29g1372 368 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 65 158 IPR001179 GO:0003755
Lele29g1372 368 SUPERFAMILY TPR-like 173 327 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1372 Lele-ChrLele29 20468159 20471976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1372 53 334 Calmodulin-binding Proteins AT5G48570 33.110 1.20e-30 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1372 29 20468159 20471976 Lele31g0205 31 2014160 2018024 hybridization
Lele29g1372 29 20468159 20471976 Lele32g1206 32 13039425 13043305 hybridization