Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1341 ATGGCAAAGAGGAAGAGCTGGTTTAGTTTCGTGAAGAGGCTCTTTGTACGGGACTCACAGTCCAAACCAGAGAAGAAAGAGAAAAGAAGGAAATGGATGTTTGGAATTGGAAGACTAAAGATAAAGAGATTACCTTCTATTACAGCTCCACCAGCAACACTAAAAGAAACAAAACAAGAGGTTGAAAAGCTCAATAATAATGGCAATCAATGTCACGAAGAAACTGAAGAATTACAAGTTGTTGTTAAGACCAGAATTGAGGCTCCTCAACCCACATTACAATGCCAGAGGAAGATTCAAGAATCTTCAGCCATCATAATTCAAACTACATTTCGGGGTTACCTTGCAAGGAAGGCTCTAAGGGCATTGAAGGGAATAGTAAAGCTACAAGCCATCATTAGAGGCAGAGCAGTAAGACGGCAAACTATGAGCACTCTCAAGTGCTTGCAGTCACTTGTTGATATCCAGTCACAGTTCTGTGCCAAAAGACTCCAAATGGTTAAAGGGAGATGGGATTATGATGAGAAGCAAGAGATTCCAAGTTTTAGGGACAAGATAATAAGGATGGATTCAAACAGTGAAAGGAGGTGGGATGACAGCATTTTGTTGAAGGAAGACACAGATGCTTCTTACATGAGCAAGAAAGAAGCAGAAGTTAAGAGAGAACGAATGAAAGAATACTCATTCAATCATAGAAGATCAGCAGAATCAGATAGAAAGAAGGTAAATGGAAGATGGAGGTATTGGATGGAGCAGTGGGTAGATACCCAACTTTCCAAAAGCAAAGAACTTGAAGATTTAGATTCACTTTTCAGTTCACATTACAGAGCAGCAGGGGAAGAAGATGGAGTAGTAGGAGGAAGAAGACAGCTTAATTTGAGAAATATTCAGAGTAAAAGACAAAATCAGATTATTGAAGGCCTATATTCTCCAAAACTTGCTCCAATAAGAAAACCTTCTCCTCACAGAAGGCAACATTCTCTGGGAAATGAAGAGCCTTCAAGCCCTTCTGTAATACTTCCAACATACATGTCAGCAACAGAATCAGCCAGAGCAAAAGCAAGATCTTCAAGCTCCCCAAAACTAAGAACTGTGAATGTGGTGGATTCAACAAAACTTGATGGTAACTCACCATGCAAAAAGAATATATCTTTTGTATCTTCTTCCATTAACCAGCAGAGATCTCCAAGTTTAAAGGGAGTCTCAGGACCTATAAGATCAAGCAGGACAATGAAGGGTCTCAGCATTAACTCAGATAGCTCATTTCTGTACGGTTACAACAGAGATTGGGATGGACAAGTGGATATTATTGTTTTTGACTTGAGTGAACATCAATGTGAAGATTAG 1347 0.3957 MAKRKSWFSFVKRLFVRDSQSKPEKKEKRRKWMFGIGRLKIKRLPSITAPPATLKETKQEVEKLNNNGNQCHEETEELQVVVKTRIEAPQPTLQCQRKIQESSAIIIQTTFRGYLARKALRALKGIVKLQAIIRGRAVRRQTMSTLKCLQSLVDIQSQFCAKRLQMVKGRWDYDEKQEIPSFRDKIIRMDSNSERRWDDSILLKEDTDASYMSKKEAEVKRERMKEYSFNHRRSAESDRKKVNGRWRYWMEQWVDTQLSKSKELEDLDSLFSSHYRAAGEEDGVVGGRRQLNLRNIQSKRQNQIIEGLYSPKLAPIRKPSPHRRQHSLGNEEPSSPSVILPTYMSATESARAKARSSSSPKLRTVNVVDSTKLDGNSPCKKNISFVSSSINQQRSPSLKGVSGPIRSSRTMKGLSINSDSSFLYGYNRDWDGQVDIIVFDLSEHQCED 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1341 448 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Lele29g1341 448 SMART iq_5 99 121 IPR000048 GO:0005515
Lele29g1341 448 Coils Coil 54 74 - -
Lele29g1341 448 Gene3D - 98 150 - -
Lele29g1341 448 PANTHER IQ-DOMAIN 5-RELATED 1 386 - -
Lele29g1341 448 MobiDBLite consensus disorder prediction 312 338 - -
Lele29g1341 448 Pfam IQ calmodulin-binding motif 102 121 IPR000048 GO:0005515
Lele29g1341 448 ProSiteProfiles IQ motif profile. 100 128 IPR000048 GO:0005515
Lele29g1341 448 Pfam Protein of unknown function (DUF4005) 320 393 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1341 Lele-ChrLele29 20050101 20053509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1341 1 422 IQD Protein Family AT5G13460 43.656 1.32e-100 306
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1341 29 20050101 20053509 Lele31g0236 31 2411198 2414471 hybridization
Lele29g1341 29 20050101 20053509 Lele32g1178 32 12132997 12137074 hybridization