Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele29g1336 | ATGCTAAACACAACACAAGCAAACACAAGCATGGCTTTGGAATCCAGAGAGAATAATCATCATAAGGCTGAAGATGATGATTCATATTGTCTTTCTGCCATGCATCTGTGTTGCAGTCAGATCTATTCTGCAGTTTTAAACGCAGCTCTTGAGCTCAACTTGTTTGAGATCATAGCTAAGGAAGGAGGAAGACGCGTGTCGGCCTCTGAAGTAGCTTCAAAGCTTCCAACTTCCTATCAACACAAAGATTTGGCTTTCAGAATCGATCGTCTCTTGAGGCTTCTTTCTACTCACTCTCTTCTGAATTGTTCATCTCGTGAGAACGAAGATGGTGGCTCTGAAAGAGTCTATGCAATTTCTCCTGTTGGAAAGTACTTTGTTGGTGGAGACGATAACGGTGGATTCTTGGCTCTCTTCTCGTCATTCATATGTCATAGGGCACTCGTGGATGTTTGGCTGAGCTTTAAGGATGCAGTCATAGACGAAGACCATGACTTGTTCAAGAAAGTTCATGGGATGGCAATGTATCAATACGCTGAGAAAGATCCAAAGTGGAACAGTATTTTCAACAAAGCAATGGCTAACATTTGTAATATTGAGATGAATAGAATATTGGAAATATATAAAGGATTTGGAGGAATATCAACACTTGTTGATGTTGGTGGTGGTACTGGCCAAAACCTCAAAATGATCATCTCCAAATATCCTGCAATTAAAGCTATTAATTTTGATTTGCCCCAGGTCATTCAAAATGCTCAACCTCATCCAGGGATTGAGTATGTTGGAGGAGATATGTTTGAAAGTGTTCCAAAAGGTGATGCCATAATACTAAAGGCTGTATGTCACAATTGGTCAGATGAAAATAGCATTAAAGTATTGAGGAAATGCAATGAAGCATTACCAGAGAAAGGGAAGGTGATAGTGGTGGAGTTCATAATGCCTGAAGCAATTGAGGCAACAGAAGAAGCCAAGTTTGTAGCGAGCATGGACAATCTCATGTTTCTTCATGATGGAAGAGAAAGAACTGAGAAAGAATTTGAATCTCTTTGCAAACGTTCTGGTTTTTCTGCTTTCAAAGTTGCTTGTCGTGCCTTCTCTGCTCTTGGAGTCATGGAATTCTATAAATAA | 1128 | 0.3989 | MLNTTQANTSMALESRENNHHKAEDDDSYCLSAMHLCCSQIYSAVLNAALELNLFEIIAKEGGRRVSASEVASKLPTSYQHKDLAFRIDRLLRLLSTHSLLNCSSRENEDGGSERVYAISPVGKYFVGGDDNGGFLALFSSFICHRALVDVWLSFKDAVIDEDHDLFKKVHGMAMYQYAEKDPKWNSIFNKAMANICNIEMNRILEIYKGFGGISTLVDVGGGTGQNLKMIISKYPAIKAINFDLPQVIQNAQPHPGIEYVGGDMFESVPKGDAIILKAVCHNWSDENSIKVLRKCNEALPEKGKVIVVEFIMPEAIEATEEAKFVASMDNLMFLHDGRERTEKEFESLCKRSGFSAFKVACRAFSALGVMEFYK | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele29g1336 | 375 | SUPERFAMILY | "Winged helix" DNA-binding domain | 25 | 131 | IPR036390 | - | |
| Lele29g1336 | 375 | Pfam | Dimerisation domain | 45 | 96 | IPR012967 | GO:0046983 | |
| Lele29g1336 | 375 | Gene3D | - | 10 | 126 | IPR036388 | - | |
| Lele29g1336 | 375 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 34 | 375 | IPR016461 | GO:0008168 | |
| Lele29g1336 | 375 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lele29g1336 | 375 | Gene3D | Vaccinia Virus protein VP39 | 129 | 375 | IPR029063 | - | |
| Lele29g1336 | 375 | PANTHER | O-METHYLTRANSFERASE | 39 | 365 | IPR016461 | GO:0008168 | |
| Lele29g1336 | 375 | FunFam | Caffeic acid 3-O-methyltransferase | 10 | 126 | - | - | |
| Lele29g1336 | 375 | FunFam | Caffeic acid O-methyltransferase | 130 | 375 | - | - | |
| Lele29g1336 | 375 | CDD | AdoMet_MTases | 216 | 313 | - | - | |
| Lele29g1336 | 375 | PIRSF | O-mtase | 10 | 375 | IPR016461 | GO:0008168 | |
| Lele29g1336 | 375 | Pfam | O-methyltransferase domain | 152 | 356 | IPR001077 | GO:0008171 | |
| Lele29g1336 | 375 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 139 | 371 | IPR029063 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele29g1336 | Lele-ChrLele29 | 19984931 | 19988576 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele29g1336 | 26 | 375 | Monolignol Biosynthesis Gene Families | AT5G54160 | 47.727 | 1.26e-112 | 331 |