Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1316 ATGGCTTCTAGCAATCCATTCTTTGATGATATACGGAGCAAATCTGAGGTTGATCCTCCTTCAAATGAGGAGCCAATGGATATAAGTGAGCTAGTGAATGATCCTGCACAAACTGCACTAAAATCTAATGTGGCCGTTACAAGCAGTGTTCATGAACTTTTAGAGTGTCCTGTGTGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGCTCAGGTTGCAAACCCAGGGTCCACAACCGGTGTCCTACCTGTAGACATGAGCTTGGCAATATTAGATGCTTGGCATTGGAGAAGGTGGCTGCGTCTTTAGAACTTCCTTGTAAATACCAGGCTTTTGGGTGCATGGGCATATATCCTTATTACTGCAAGTTGAAGCATGAATCTCAATGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCACTGTCATTGGTGATATTCCTTTTTTGGTGGCCCATTTGAAAGATGATCACAAAGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAATCAAACCCACAAGAAGTTGAAAATGCCACATGGATGCTTACGGTCTTCAGCTGCTTTGGTCAATATTTTTGTCTACACTTTGAAGCTTTTCAGCTGGGGATGGCTCCAGTCTACATAGCCTTCTTGCGATTTATGGGCGATGATAACGAGGCAAAGAACTATAGCTACAGTCTGGAGGTTGGTGGTAACGGGAGGAAGATGACATGGCAGGGCGTGCCAAGAAGCATCAGGGACAGCCACCGAAAGGTTCGTGACAGTTTTGACGGTCTTATCATCCAAAGGAACATGGCTCTGTTCTTTTCTGGGGGAGACAGGAAGGAATTGAAGCTAAGGGTTACAGGGAGAATTTGGAAAGAACAGTGA 915 0.4426 MASSNPFFDDIRSKSEVDPPSNEEPMDISELVNDPAQTALKSNVAVTSSVHELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQAFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1316 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Lele29g1316 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Lele29g1316 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Lele29g1316 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 41 303 - -
Lele29g1316 304 MobiDBLite consensus disorder prediction 1 28 - -
Lele29g1316 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Lele29g1316 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 108 IPR013083 -
Lele29g1316 304 SUPERFAMILY RING/U-box 50 97 - -
Lele29g1316 304 SUPERFAMILY TRAF domain-like 109 301 - -
Lele29g1316 304 CDD Sina 170 298 - -
Lele29g1316 304 CDD RING-HC_SIAHs 54 92 - -
Lele29g1316 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele29g1316 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Lele29g1316 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Lele29g1316 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1316 Lele-ChrLele29 19829343 19830949 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1316 47 304 C3H Transcription Factor Family AT2G41980 79.070 1.23e-160 448