Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1314 ATGGCTTCTAGCAATCCATTCTTTGATGATATACGGAGCAAATCTGAGGTTGATCCTCCTTCAATGAGGAGCCAATTGAATGATCCTGCACAAACTGCACTAAAATCTAATGTGGCCGTTACAAGCAGTGTTCATGAACTTTTAGAGTGTCCCGTGTGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGCTCAGGTTGCAAACCCAGGGTCCACAACCGGTGTCCTACCTGTAGACATGAGCTTGGCAATATTAGATGCTTGGCATTGGAGAAGGTGGCTGGTTCTTTAGAACTTCCTTGTAAATACCAGGCTTTTGGGTGCATGGGCATATATCCGTATTACTGCAAGTCGAAGCATGAATCTCAGTGCGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCACTGTCATTGGTGATATTCCTTTTTTGGTGGCCCATTTGAAAGATGGTCACAAAGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAATCAAACCCACAAGAAGTTGAAAATGCCACACGGATGCTTACGGTCTTCAGCTGCTTTGGTCAATATTTTTGTCTACACTTTGTAGCTTTTCAGCTGGGGATGGCTCCAGTCTACATAGCCTTCTTGCGATTTATGGGCGACGATAACGAGACAAAGAACTATAGCTACAGTCTCGAGGTTGGTGGTAACGGGAGGAAGATGACATGGCAGGGCGTGCCAAGAAGCATCAGGGACAGCCACCGAAAGGTTCGTGACAGTTTTGACGGTCTTATCATCCAAAGGAACATGGCTCTGTTCTTTTCTGGGGGAGACAGGAAGGAATTGAAGCTAAGGGTTACAGGGAGAATTTGGAAAGAACAGTGA 897 0.4504 MASSNPFFDDIRSKSEVDPPSMRSQLNDPAQTALKSNVAVTSSVHELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAGSLELPCKYQAFGCMGIYPYYCKSKHESQCAYRPYNCPYAGSECTVIGDIPFLVAHLKDGHKVDMHNGSTFNHRYVKSNPQEVENATRMLTVFSCFGQYFCLHFVAFQLGMAPVYIAFLRFMGDDNETKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1314 298 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 28 297 - -
Lele29g1314 298 FunFam E3 ubiquitin-protein ligase SINAT3 102 158 - -
Lele29g1314 298 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 159 291 IPR008974 GO:0005515
Lele29g1314 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 158 IPR013083 -
Lele29g1314 298 MobiDBLite consensus disorder prediction 1 28 - -
Lele29g1314 298 CDD RING-HC_SIAHs 48 86 - -
Lele29g1314 298 SUPERFAMILY RING/U-box 44 91 - -
Lele29g1314 298 Pfam Seven in absentia protein family 92 291 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele29g1314 298 FunFam E3 ubiquitin-protein ligase SINAT5-like 9 101 - -
Lele29g1314 298 ProSiteProfiles Zinc finger RING-type profile. 50 86 IPR001841 -
Lele29g1314 298 FunFam E3 ubiquitin-protein ligase SINAT5-like 159 291 - -
Lele29g1314 298 SUPERFAMILY TRAF domain-like 103 295 - -
Lele29g1314 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 101 IPR013083 -
Lele29g1314 298 ProSiteProfiles Zinc finger SIAH-type profile. 103 163 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1314 Lele-ChrLele29 19794633 19798864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1314 41 298 C3H Transcription Factor Family AT2G41980 77.132 4.21e-155 434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1314 29 19794633 19798864 Lele31g0261 31 2661088 2664521 hybridization