Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1311 ATGGAATCATCAAGACCCATTATCATCGTTCCAGGAATTCCAATTATCTTCTTCATAGTCATCAGCTTCATCAGAACAGGTGCTTCTCAGCAGGCACCGATCTACGTGGGAGATGACTGTCATAACAAAACCCCACAAATTCTTACTGCCTCCTACAAAACCAACCTTAACCAGCTTCTCTCAAGGCTTTCCGATGATGCTTCCATGAGCAAACACTTCAGCAACACCACCATCGGAAACACCGCTAATAACTCCACCGTGTATGGCCTCTACGACTGCCGTGATGACGTTACTGAATACTTATGCCAGTTCTGTATCACCACCGTTACCAGAGAGGTTCTCCAACGTTGCCCAAATCAACCTTCTGCTATAATATGGTACACCTACTGCATCCTCCGATACTCTAATGAGAACTTCTTTGGGAAGGCGATGACGAGCCCATTATGGTCCATGGGAGGAGAGAAGAAGGTGCCGGATCTGACCGAGGGGAAGAAGGCGGAGAGTTACATAAGGAGTCTGATCAAAGAAGCTACGGAGGAGACAAAGAGATTGAGCGCATGGGGAGAGTCTAATTTAGGCGGCGGAAGAACAAGTTATGCCTTGGTACAGTGCAATAAAGACCTCACCAGTGAGAGTTGCAGGCAGTGTTTGGAGGCTATGTTGAATAAGGCTATTCAATGCTGTGAGCAGAAGCAAGATTGGCAAGTTGGGGCGCCAAGTTGCATCGTCAAGTACTCTAACTACATGTTCTACCCGGCACCATCTTCTCATCATCCTAAGACAGCCAATAATGGAGTTAGCAAGTCAAAAGCCTTGATCATAAGCATAAGTGTATTTGTGATTGTGGTTGTACTAAGCTTTTCTGTCTACCTCTTCAGGCAAATCAAGAGTAGAAAAGATGAAACGTCAGTGGAGAGCACTCCAATGCCTTTTGAACTTTCTCAAAGAGAGAGTTCACTGAATACAGACCTTCCCACAATCCCTTTGCTTGAGATTCAACAGAGCACTTCTCACTTTTCAGAAGATTCTAAATTGGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGAATACTACCAGATGGAAAGGAAATTGCTGTTAAAAGACTCTCTCAAACTTCAGGTCAAGGATCACAAGAGTTCATGAATGAAGTGATATTCATAGCAAAATTGCAACATAGAAACCTTGTTAGACTCTTGGGTTGCTGCTTGGAGGAAAATGAAAAACTACTTGTATATGAGTACATGCCTAATTCTAGCCTTGACTCACACCTCTTCACTGGTCAAGAGGAATAG 1293 0.4408 MESSRPIIIVPGIPIIFFIVISFIRTGASQQAPIYVGDDCHNKTPQILTASYKTNLNQLLSRLSDDASMSKHFSNTTIGNTANNSTVYGLYDCRDDVTEYLCQFCITTVTREVLQRCPNQPSAIIWYTYCILRYSNENFFGKAMTSPLWSMGGEKKVPDLTEGKKAESYIRSLIKEATEETKRLSAWGESNLGGGRTSYALVQCNKDLTSESCRQCLEAMLNKAIQCCEQKQDWQVGAPSCIVKYSNYMFYPAPSSHHPKTANNGVSKSKALIISISVFVIVVVLSFSVYLFRQIKSRKDETSVESTPMPFELSQRESSLNTDLPTIPLLEIQQSTSHFSEDSKLGEGGFGPVYKGILPDGKEIAVKRLSQTSGQGSQEFMNEVIFIAKLQHRNLVRLLGCCLEENEKLLVYEYMPNSSLDSHLFTGQEE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1311 430 SUPERFAMILY Protein kinase-like (PK-like) 311 428 IPR011009 -
Lele29g1311 430 Pfam Salt stress response/antifungal 49 136 IPR002902 -
Lele29g1311 430 Pfam Salt stress response/antifungal 167 248 IPR002902 -
Lele29g1311 430 FunFam Cysteine-rich receptor-like protein kinase 28 36 138 - -
Lele29g1311 430 Pfam Protein tyrosine and serine/threonine kinase 342 425 IPR001245 GO:0004672|GO:0006468
Lele29g1311 430 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Lele29g1311 430 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 51 425 - -
Lele29g1311 430 ProSiteProfiles Protein kinase domain profile. 339 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g1311 430 Gene3D - 159 250 IPR038408 -
Lele29g1311 430 Gene3D - 35 139 IPR038408 -
Lele29g1311 430 Gene3D Phosphorylase Kinase; domain 1 302 414 - -
Lele29g1311 430 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Lele29g1311 430 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 305 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1311 Lele-ChrLele29 19742967 19750264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1311 17 430 Receptor kinase-like Gene Family AT4G05200 34.793 5.75e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele29g1311 PK_Tyr_Ser-Thr 2.5e-16 CL0016