Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1309 ATGTTAACGCCATTGTTTATGGAGTCCCTTGTTCTTAATCTCCATGAGATCTCAGCTGTCAAATTTGGCAAATTCAAGCTTAAATCTGGCATTTCCTCACCGATATACTTAGACCTCCGGCTCATTATATCATACCCTTCCCTTCTCCGCCAAGTCTCTCAAACATTGATCTCCTCTGTTTCTTCCTCTTCCTTTGACCTTGTATGTGGTGTCCCCTACACTGCTCTACCCATTGCTACTTGTGTCTCTGTGACTCAGAATATTCCCATGGTCATGCGCCGCAAGGAAATCAAAGACTATGGCACTGCTAAAGCCATTGAAGGTGATTTCAAGGCTGGTGAAAGTTGTTTAATCATTGAGGATTTAGTTACCAGTGGCACCTCAGTGTTAGAAACTGCTGCACCCCTGCGTGCTGCAGGGTTAAAGGTTAGCGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGGAGAATGGGATTAGGCTACATTCTATTGTTAAATTGACTGAAATGGTAAACATTTTGAGGGAAAAGGGAAAGCTTGAGAAGGATATGGTAGAGGTTGTTATGAAATTCTTGGAGGAGAATCAGAGGGTTGCTGCTTTGGCAAAATTAGGGAAGCCTAAGAGGGTCAAGGCTTTGTCATTTGGGGAAAGGGCAAAGTTTTCTAAGAATCCAACTGGAAAGAGGTTGTTTGAGATAATGGCCGAGAAAAAGAGTAATCTTTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCAGAAAAGGTTGGGCCTGAGATATGCTTGCTGAAAACTCATGTGGATATTTTGCCAGATTTTAATCCTGATTTTGGTTCTAAGCTTCGCAAGATTGCAGAGAAACATAATTTCTTAGTCTTTGAGGATCGTAAATTTGCCGACATTGGTAGCACGGTTACTAGGCAATATGAAGGGGGGATTTATCACATACTGGAGTGGGCTGATATAGTAAATGCTCACATTATTTCTGGTCCTGGAATTGTGGATGGATTGAAATTGAAGGGTTTGCCTCGGGGTAGGGCTTTGTTGTTGCTTGCCGAAATGAGTTCAGCCGGTAACCTTGCCACGGGAGATTATACAGCTGCAGCAGTGAGAGTTGCTGAGGAACATTCAGATTTTGTGATTGGCTTTATTTCAGTCAATCCAGCATCGTGGCCAGGGCAACCGGTAGATCCGTCTTTCATTCATGCAACTCCTGGAGTTCAAATGGTGACTGGTGGCGATGCATTAGGGCAGCAATATAACACTCCATATTCTGTAATATATAACAAGGGAAGTGACATAATTATTGTGGGTCGTGGCATCATAAAAGCTGAAAACCCGGCAAAGGCAGCTCATGAATATCGACTTGCAGGATGGAAAGCTTATTTGGCCAAGTTCACTTGA 1434 0.431 MLTPLFMESLVLNLHEISAVKFGKFKLKSGISSPIYLDLRLIISYPSLLRQVSQTLISSVSSSSFDLVCGVPYTALPIATCVSVTQNIPMVMRRKEIKDYGTAKAIEGDFKAGESCLIIEDLVTSGTSVLETAAPLRAAGLKVSDAVVLIDREQGGRENLEENGIRLHSIVKLTEMVNILREKGKLEKDMVEVVMKFLEENQRVAALAKLGKPKRVKALSFGERAKFSKNPTGKRLFEIMAEKKSNLCLAADVGTAAELLEIAEKVGPEICLLKTHVDILPDFNPDFGSKLRKIAEKHNFLVFEDRKFADIGSTVTRQYEGGIYHILEWADIVNAHIISGPGIVDGLKLKGLPRGRALLLLAEMSSAGNLATGDYTAAAVRVAEEHSDFVIGFISVNPASWPGQPVDPSFIHATPGVQMVTGGDALGQQYNTPYSVIYNKGSDIIIVGRGIIKAENPAKAAHEYRLAGWKAYLAKFT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1309 477 CDD PRTases_typeI 65 172 IPR000836 -
Lele29g1309 477 SUPERFAMILY Ribulose-phoshate binding barrel 219 473 IPR011060 -
Lele29g1309 477 TIGRFAM pyrF: orotidine 5'-phosphate decarboxylase 247 465 IPR014732 GO:0004590|GO:0044205
Lele29g1309 477 SMART OMPdecase_2 246 464 IPR001754 GO:0004590|GO:0006207
Lele29g1309 477 TIGRFAM pyrE: orotate phosphoribosyltransferase 14 175 IPR004467 GO:0004588
Lele29g1309 477 Pfam Phosphoribosyl transferase domain 60 158 IPR000836 -
Lele29g1309 477 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 302 315 IPR018089 GO:0004590|GO:0006207
Lele29g1309 477 Gene3D Aldolase class I 216 477 IPR013785 -
Lele29g1309 477 FunFam Uridine monophosphate synthetase 216 477 - -
Lele29g1309 477 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 245 464 IPR001754 GO:0004590|GO:0006207
Lele29g1309 477 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 233 IPR023031 GO:0004588|GO:0006221
Lele29g1309 477 SUPERFAMILY PRTase-like 8 196 IPR029057 -
Lele29g1309 477 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 7 475 - -
Lele29g1309 477 Gene3D - 6 209 IPR029057 -
Lele29g1309 477 CDD OMP_decarboxylase_like 247 464 - -
Lele29g1309 477 FunFam Uridine monophosphate synthetase 4 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1309 Lele-ChrLele29 19693263 19696782 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1309 29 19693263 19696782 Lele09g0243 09 1750643 1753958 CCT
Lele29g1309 29 19693263 19696782 Lele10g0234 10 1559863 1563584 CCT
Lele29g1309 29 19693263 19696782 Lele11g0247 11 2740721 2742503 CCT
Lele29g1309 29 19693263 19696782 Lele12g1026 12 17818630 17820795 CCT
Lele29g1309 29 19693263 19696782 Lele31g0267 31 2827424 2831376 hybridization
Lele29g1309 29 19693263 19696782 Lele32g1155 32 11750259 11754884 hybridization