Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1305 ATGTTGGACGACGAAGGCGCCGATCTTGCTTCGGTGACGGCAACACTGAGGTTGGACCTTCCGCTTCTGGAATTCTACTCATGGTTGAGAGATTTAGTTGTGCTGGTTGTAGCAGCAGTGCTTGACTGCTTTTTGTCTCTGAATCACCCAAATTTCCTTTTCCCAAATTGTAATTGCTTCTTGGATATTTTTGTTATGGTTGTTCTTCAAAATCCCACCCAGTTCATCCTGAGCCTATGCGCAATCGTTGTGAAGGGTCATTGGAGTAATCTGTTGAAGCTGGAGAAGGCTTCTGCTCTCACTTCTTCCACCATTCACCAGGTACTTCTGCAACTCTCTCTCCATGGCTTTGCTCCATCTCATTCCTTCTCATTCTTCAAATGGGTTGGGACAATTCCAAATTATAAGCATTCTTTGCAATGTTCATGGTCCATGCTTCATATCCTCGTAAAGCATAAACATTTTAGAACTGCACAAGAGATGCTTGAGAAAATTGCCGACAGGGATTTTCTTTCCTCGCCGTCAGTTTTGAGAACTTTGACTGAAATTCAACGTGACCCAGAAGTGAATTCGCATATATTGAGCTGGCTTGTAATACATTATGCAAAATCAAAGATGACCGATGATGCCATTCAGGTTTTTGAGCAGATGAGGATATATAAGTTGAACCCTCATTTGCATGCCTGTACTGTGCTTCTGAATTCTTTGGTCAAGGATGGGGTTACTAACATGGTATGGAAGGTTTACAAACAAATGGTTAAAGCTGATGTTTTTCCGAATATACATATCTATAATGTGTTAATCCATGCTTGTTCCAAATCAGGAGATGTAGAGAGGGCAGAACATTTACTGAATGAAATGGAAATGAAAGGCGTGTTTCCTGATATTTTCACTTACAATACTTTGATATCATTATATTGCAAGAGAAGTATGCACTACGAGGCTTTATCTATCCAGGAGAGAATGGAAAGAGAAGGAATCAATCTTGACATTGTTAGTTACAATTCTCTTATTTATGGATTTTGTAGAGAGGGTAGGATGAGAGACGCCATGAGGATATTCAGCAACATCAAAGGGACAATTCCTAATAATGTTACATACACTACATTGATTGATGGGTATTGTAAAACAAATGACCTGGAGCAAGCTCTGAAATTGTGTGAGATAATGCAGGCTAAGGGATTGTACCCTGGAGTTGTTACTTATAATTCAATTTTGCGTAAGCTGTGTCAGGATGGAAAAATAAGAGAGGCAAATAAACTCTTGACCGAGATGAGTGAAAGAAAAATTCAGCCTGATACTGTCACATGTAACACGTTGATTAATGCTTATTGCAAGATAGGAGATATGAAATCTGCATTGAAATTTAAGAACAAGATGTTAGAGGCTGTATTGAAACCTGACCCATTTACTTATAAAGCATTAATTCATGGGTTCTGCAAGATAAAAGAGCTGGAAAGAGCCAAGGATATGTTGTTTTCCATGCTTGATGCTGGGTTTTCCCCCAATTATTACACTTATTCGTGGATCGTAGATGGTTACTGCAATAAAGACAATGAAGATGCAGTTGTTACACTCCCTGATGAGTTTCTTAGAAAAGGTCTTTGTGTTGATGTTTCAATATACAGGGCTTTAATAAGAAGGTTATGTAAATTAGAAAGGATACAATGTGCTCTGAAGTTATTTAATCTTATGGAAGGGAGGGGAATATTAGGTGACAGCGTTGTCTACACAAGTCTTGCTTATGCTCATTGGAAATTAGGGAATGCAAAGTTTGCATCAAATATATTAGAAGAGATGACCAGAAGGAGGTTGATGATAACAAGCAAAATCTATAAATGTTTTGGTAATCCTCTTCGTAGTGAAAACCACACTTCATGTTCATTCTGGAATTATGTAGCTGAAAGGGGCCTTATGTCAAGAAATACAATGACTAAAATAAAGCAAATGGAATTATGA 1959 0.3823 MLDDEGADLASVTATLRLDLPLLEFYSWLRDLVVLVVAAVLDCFLSLNHPNFLFPNCNCFLDIFVMVVLQNPTQFILSLCAIVVKGHWSNLLKLEKASALTSSTIHQVLLQLSLHGFAPSHSFSFFKWVGTIPNYKHSLQCSWSMLHILVKHKHFRTAQEMLEKIADRDFLSSPSVLRTLTEIQRDPEVNSHILSWLVIHYAKSKMTDDAIQVFEQMRIYKLNPHLHACTVLLNSLVKDGVTNMVWKVYKQMVKADVFPNIHIYNVLIHACSKSGDVERAEHLLNEMEMKGVFPDIFTYNTLISLYCKRSMHYEALSIQERMEREGINLDIVSYNSLIYGFCREGRMRDAMRIFSNIKGTIPNNVTYTTLIDGYCKTNDLEQALKLCEIMQAKGLYPGVVTYNSILRKLCQDGKIREANKLLTEMSERKIQPDTVTCNTLINAYCKIGDMKSALKFKNKMLEAVLKPDPFTYKALIHGFCKIKELERAKDMLFSMLDAGFSPNYYTYSWIVDGYCNKDNEDAVVTLPDEFLRKGLCVDVSIYRALIRRLCKLERIQCALKLFNLMEGRGILGDSVVYTSLAYAHWKLGNAKFASNILEEMTRRRLMITSKIYKCFGNPLRSENHTSCSFWNYVAERGLMSRNTMTKIKQMEL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1305 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Lele29g1305 652 Pfam PPR repeat 393 426 IPR002885 -
Lele29g1305 652 Pfam PPR repeat 533 566 IPR002885 -
Lele29g1305 652 SUPERFAMILY HCP-like 370 519 - -
Lele29g1305 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Lele29g1305 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 360 IPR002885 -
Lele29g1305 652 TIGRFAM PPR: pentatricopeptide repeat domain 263 296 IPR002885 -
Lele29g1305 652 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Lele29g1305 652 TIGRFAM PPR: pentatricopeptide repeat domain 332 356 IPR002885 -
Lele29g1305 652 TIGRFAM PPR: pentatricopeptide repeat domain 228 260 IPR002885 -
Lele29g1305 652 TIGRFAM PPR: pentatricopeptide repeat domain 470 503 IPR002885 -
Lele29g1305 652 TIGRFAM PPR: pentatricopeptide repeat domain 400 434 IPR002885 -
Lele29g1305 652 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Lele29g1305 652 TIGRFAM PPR: pentatricopeptide repeat domain 541 573 IPR002885 -
Lele29g1305 652 TIGRFAM PPR: pentatricopeptide repeat domain 435 468 IPR002885 -
Lele29g1305 652 Gene3D Tetratricopeptide repeat domain 526 629 IPR011990 GO:0005515
Lele29g1305 652 Gene3D Tetratricopeptide repeat domain 269 376 IPR011990 GO:0005515
Lele29g1305 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Lele29g1305 652 Gene3D Tetratricopeptide repeat domain 377 525 IPR011990 GO:0005515
Lele29g1305 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Lele29g1305 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Lele29g1305 652 Pfam PPR repeat family 432 481 IPR002885 -
Lele29g1305 652 Pfam PPR repeat family 330 376 IPR002885 -
Lele29g1305 652 Pfam PPR repeat family 259 308 IPR002885 -
Lele29g1305 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Lele29g1305 652 Gene3D Tetratricopeptide repeat domain 83 256 IPR011990 GO:0005515
Lele29g1305 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Lele29g1305 652 Pfam PPR repeat 229 256 IPR002885 -
Lele29g1305 652 Pfam PPR repeat 201 218 IPR002885 -
Lele29g1305 652 Pfam PPR repeat 575 604 IPR002885 -
Lele29g1305 652 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 105 425 - -
Lele29g1305 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1305 Lele-ChrLele29 19622438 19625730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1305 187 617 Glycosyltransferase AT1G05670 31.871 1.36e-66 230
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1305 29 19622438 19625730 Lele31g0272 31 2897496 2899591 hybridization
Lele29g1305 29 19622438 19625730 Lele32g1150 32 11661303 11663060 hybridization