Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1304 ATGGGTATGGCAGCAGAGACCCAGTTTCATGTTTTGGCTGTTGATGACAGTATCATTGACAGAATGTTGATTGAGAGGCTCCTCAAAACCTCATCCTTCCAAGTTACTGCGGTGGATTCTGGGAGCAAGGCTTTGAAATTTCTTGGTTTAAATGCAGATGAACAGAGAAAAGCTTCTAATTGCCATCAGGATTTGGAAGTAAATCTGATCATAACAGATTACTGTATGCCAGGAATGACAGGCTATGATCTACTGAGAAAAATCAAGGAATCTGAATCTCTCAAAAACATACCAGTGGTAATTATGTCCTCAGAGAATGTCCCATCAAGGATCAACAGATGCTTAGAAGAAGGAGCTCAAGAATTTTTCCTGAAACCTGTTCAACAGTCAGATGTAAACAAGCTCAAGCCACATTTGATGAAATCAAGAGTTCAGGAAAAGGGAGACCAATTCATCAATAACAAAAGGAAGGACACGGAAGAAGAAGAAATCCATTCCCCAGAGAAAACCAGAGCAAAAATATAG 525 0.3981 MGMAAETQFHVLAVDDSIIDRMLIERLLKTSSFQVTAVDSGSKALKFLGLNADEQRKASNCHQDLEVNLIITDYCMPGMTGYDLLRKIKESESLKNIPVVIMSSENVPSRINRCLEEGAQEFFLKPVQQSDVNKLKPHLMKSRVQEKGDQFINNKRKDTEEEEIHSPEKTRAKI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1304 174 Gene3D - 10 173 - -
Lele29g1304 174 ProSiteProfiles Response regulatory domain profile. 10 140 IPR001789 GO:0000160
Lele29g1304 174 MobiDBLite consensus disorder prediction 144 174 - -
Lele29g1304 174 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 154 IPR045279 GO:0009736
Lele29g1304 174 CDD REC_typeA_ARR 11 135 - -
Lele29g1304 174 Pfam Response regulator receiver domain 11 132 IPR001789 GO:0000160
Lele29g1304 174 SUPERFAMILY CheY-like 8 141 IPR011006 -
Lele29g1304 174 SMART REC_2 9 139 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1304 Lele-ChrLele29 19620622 19621717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1304 1 145 Response Regulator Gene Family AT3G57040 69.737 1.28e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele29g1304 Response_reg 4.7e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1304 29 19620622 19621717 Lele31g0273 31 2900333 2901423 hybridization
Lele29g1304 29 19620622 19621717 Lele32g1149 32 11653301 11660440 hybridization