Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1300 ATGATCTGCATCGACAGTGGATTAACTAGTGTTTCCATGAGTCCACCTGCTGAGGAGAAGATGGACGATGGTAAGCCATTTGCTGTCTCAGCCAACAGCTCACAGGTCCACGGCGAACATGGTGACCCTGCTGACTCTCGTTTCACTGAATTCTGCAAGAATGGGTTATCATTGGATGATGAAAGTTGCAGACAAGCTATGAAGCTGTTCACAGAAACCAAACACCTTCTACAGACCAATGTGTCATCTCTTGGCAATGGAACGTACGAAGAAGCAGAACGGTATTGGTTTTCCTTTGTCTTATACTGTGTCAAGAGATTGGCTGATAAGCATATAGACAATGAGAAGAAAGTGATCGATAGCAATGGACTTACCTTGTGCCAGATCTTGAGAAAGGCAAAGCTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCAATTTTAAGTAATATATATGGCACAGATTGGGAAAACAGGCTTGAGGCAAAGGAGTTGCATGCAAACTTTCTTCACTTAAGCATTCTTAGCAAGTATTATAAGCGTGCATTTGGGGAGTTATTCTTGGCAAATGATGCTATTGAAAAAAATTCAGCTGTTTCCATGACTGGTGGTTATGCATCTCAATATCATCGATTTGGATGGTTGTTATTTTTGGCTCTTCGTGTCCATGCTTTCAGCCGATTTAAAGACTTGGTGACTTGCACCAATGGTTTAGTTTCTATATTGGCTATCTTGATTATTCACATTCCTGCTCGCTTCAGAAATTTCAACATTCATGACGCATCACGCTTTGTTAATAAAAGTAGCAAAGGTGTGGACATCATTGCATCACTTTGTAACATCTATGACACTTCAGAAGATGATGTGAGGAAAACTATGGAAAAAGCCAATAATTTAATTGCAGCTATATTGAAGAAGAAGCCTTGTCTGGCATCTGAATGTAAAACTGCAACACTTGATAATATTGACAAAGATGGCTTGTTCTACTTTAATGGTCTTATGGAAGAATCATCTCTACCATCTTGTTTAAATATTTTAGAAAAAGATTATGATGATGCCATTCGAAACAAGGGTGAGCTGGATGAGAGGTTGTTTATCAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCCATGTCAACAAGTGGTGTCAAGAGGAAATTTGATTCAATGGCGTCACCTACAAAGACAATTACAAATCCACTCTCTCCCCAACGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAATTAGCGCAAATTCAAAGATGGCAGCCACTCCTGTAACCACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATATGTCCTCTTCCATCGAAGCCTTCACCTGAGCTGGAGAAATTTCTAGCATCATGTGATAGGGACGTCACAAGTGATGTAGTGTGCAGGGCACAGATTATATTGCAGGCGATATTTCCTACTAGTCCTTTAGGAGAGCGATGTTTAACTGGAAGCCTTCAAAGTGCAAACCTGATGGACAATGTTTGGGCGGAACAACGGAGACTGGAAGCCGTGAAGTTATATTATAGGGTCTTGGAGGCAATGTGCAGAGCAGAGGCCCAAATACTGCATGCAACCAATTTAACCTCGTTATTAACTAATGAGAGGTTCCATAGATGCATGCTTGCATGTTCTGCAGAATTAGTGCTGGCAACACATAAGACTGTAACAATGTTGTTTCCTGCAGTGCTGGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTGATAGAAAGCTTCATAAGACATGAAGATTCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCAATGGAAGAACGGCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCGATGTATAATTCTTTGACAGTTGCCAGACCTTCCCTCTCTTCAGAAATAACTCGACTTGGATTGCTAGCTGAACCAATGCCATCATTAGATGCAATTGCAATGCAAATTAACTTCTCTTGTGGGGGGCTGCCCACTGGGCCTTCCTCACAGAAGCCTGAGACTTTACCAAGTACAAGTCAAAATTGGGATATTAGGTCCCCAAAACGACTCTGCACAGAATATCAGAGTGTACTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTATTCCCTTCAGTAACCTTAAGTCAAGGCTACCCCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGACCAAATCCAGGAGGTGGAGGGGAGACTTGTGCAGAAACAGGGATCAATATCTTTTTCGGAAAGATTGTTAAGTTGGCGGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTCCAGTTGTCTCAACAAATAAGAGAGAACGTGTACTGTCTTTTTCAACAAATACTAAATCAAAGGACATCACTTTTCTTCAACCGCCATATTGACCAAATCATTCTCTGTTGTTTCTATGGAATCGCAAAGATTTCTCAGCTGAACTTGACTTTTAGGGAGATCATTCACAATTATAGGAAGCAACCGCAATGCAAACCACAAGTTTTTCGTGGTGTATTTATTGACTGGTCATCAACGCGCCGTAATGGGAGAACTGGACAGGAGCATGTTGATATCATTACATTTTACAATGAAATATTTATTCCTTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGGGGAACAACTACAAAAGCCAATCGAATACCTGAAGCCAACAATAACAGTGATGGCCATTTGGCTCAGTGTCCTGGATCTCCTAAAATTTCTCCTTTTCCTAGCCTTCCTGATATGTCCCCCAAGAAAGTATCTGCATCACACAATGTTTATGTCTCACCATTGCGATCAGCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTACTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGATCTGACCGCCATCAACAACCGTTTAAATGGCACCCGGAAGGTTCGAGGACCCCTTAACTTTGATGATGTTGATGTTGGCTTGGTGAGTGATTCCATGGTTGCAAACAGTCTTTATCTTCAGAATGGAAGTTGCGCGTCGTCATCTGGAGCACCAGTGAAGTCTGAGCAGCCAGACAGTTGA 3141 0.4218 MICIDSGLTSVSMSPPAEEKMDDGKPFAVSANSSQVHGEHGDPADSRFTEFCKNGLSLDDESCRQAMKLFTETKHLLQTNVSSLGNGTYEEAERYWFSFVLYCVKRLADKHIDNEKKVIDSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGPILSNIYGTDWENRLEAKELHANFLHLSILSKYYKRAFGELFLANDAIEKNSAVSMTGGYASQYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFNIHDASRFVNKSSKGVDIIASLCNIYDTSEDDVRKTMEKANNLIAAILKKKPCLASECKTATLDNIDKDGLFYFNGLMEESSLPSCLNILEKDYDDAIRNKGELDERLFINEEDSLLASGSLSGGSMSTSGVKRKFDSMASPTKTITNPLSPQRSPASHHANGIPISANSKMAATPVTTAMTTAKWLRTVICPLPSKPSPELEKFLASCDRDVTSDVVCRAQIILQAIFPTSPLGERCLTGSLQSANLMDNVWAEQRRLEAVKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSMEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIAMQINFSCGGLPTGPSSQKPETLPSTSQNWDIRSPKRLCTEYQSVLAERNSFTSPVKDRLIPFSNLKSRLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIHNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKANRIPEANNNSDGHLAQCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1300 1046 Pfam Retinoblastoma-associated protein B domain 764 891 IPR002719 GO:0005634|GO:0051726
Lele29g1300 1046 Pfam Domain of unknown function (DUF3452) 117 255 IPR024599 -
Lele29g1300 1046 Gene3D - 441 629 - -
Lele29g1300 1046 MobiDBLite consensus disorder prediction 677 696 - -
Lele29g1300 1046 Gene3D - 216 374 - -
Lele29g1300 1046 FunFam Retinoblastoma-related protein 1 715 927 - -
Lele29g1300 1046 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 44 1044 IPR028309 GO:0006357|GO:0051726
Lele29g1300 1046 FunFam Retinoblastoma-related protein 1 441 629 - -
Lele29g1300 1046 Coils Coil 350 370 - -
Lele29g1300 1046 Gene3D - 713 915 - -
Lele29g1300 1046 SUPERFAMILY Cyclin-like 446 641 IPR036915 -
Lele29g1300 1046 FunFam Retinoblastoma-related protein 1 216 374 - -
Lele29g1300 1046 SUPERFAMILY Cyclin-like 762 934 IPR036915 -
Lele29g1300 1046 MobiDBLite consensus disorder prediction 404 427 - -
Lele29g1300 1046 SMART RB_A_2 438 639 IPR002720 GO:0005634|GO:0051726
Lele29g1300 1046 Pfam Retinoblastoma-associated protein A domain 438 639 IPR002720 GO:0005634|GO:0051726
Lele29g1300 1046 SMART DUF3452_2 107 255 IPR024599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1300 Lele-ChrLele29 19564652 19572129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1300 40 1046 Core Cell Cycle Gene Families AT3G12280 70.403 0.0 1409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Lele29g1300 RB_A 1.6e-64 CL0065