Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1274 ATGAAAGTCCCCTGCTGTTCGGTTTGCCAAACGCGGTATAACGAGGAAGAGCGAGTCCCACTTCTGCTCCAATGTGGGCATGGGTTTTGCAGAGAGTGTCTCTCAAGAATGTTCTCGGCTTCTCCAGATACGACGCTAGCGTGTCCGAGGTGTCGCCATGTGTCCATAGTCGGGAACTCTGTGCAGGCTCTGCGCAAGAACTACGCCGTGCTGGCTCTTATTCACTCGGCTTCGAACGCTTCGGGTTCGAATTTCGATTGTGACTTCACAGATGATGATGAAGAAGGGGCTGATGGTGGTCAAGAAGATGGAGACAATTATAACGTCTCGGTCATGCGCCGTCGGTGCAGCCGCGGTTCCCAAACATCGAGCTCTGGCGGCTGTGGACCGGTTATAGAGGTTGGAGTGCACCAAGAGTTGAAATTTCTGCGTCGGCTAGGAGAGGGGAGGAGGGCTGGCATGGAAATGTGGACATCAGTGATTGGTGGTGGTGGTGGAAATGGACCATGCCGACATCAAGTGGCTGTGAAGAAGGTTACGATAATGGAGGAGATGGATTTGGATTGGATGCAGGGGCAGCTTGAGAATCTGCGTCGGGCATCGATGTGGTGTAGGAATGTATGTACATTTCATGGGGCAATGAGGATGGAGGAGAGTTTGTGTCTTGTGATGGACCGGTGTTATGGATCAGTTCAGTCGGAGATGCAGCGCAACGAGGGCAGACTTACTTTGGATCAAGTCTTAAGATATGGGGCGGACATTGCTAGAGGGGTGGCTGAGCTTCATGCTGCTGGTATTGTTTGCATGAATCTCAAACCATCCAATCTTCTTCTTGATGCAAATGGTCGAGCAGTGATTTCAGATTATGGACTTGCTACAATTTTGAAGAAGCCTTCTTGTCGGAAGGCCCGACCAGAATGTGATAACTCCTCAAAGATCCATTCATGCATGGAGTGTATAATGCTCAGCCCACATTACACAGCTCCAGAGGCTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGCAATAGGTATATCTGCAGAGTCGGATGCCTGGAGTTTTGGTTGTACATTGGTGGAAATGTGCACGGGTTCTGTTCCTTGGTCTGGTTTAAGTGCAGAAGAAATCTATAGAGCAGTTGTCAAGGGAAAGAAACTACCACCACAGTACGCTAGTGTGGTTGGTGGTGGAATACCAAGGGAGTTGTGGAAGATGATTGGCGAGTGCTTGCAGTTCAAACCAGCCAAAAGGCCTAGTTTTAATGCAATGTTAGCAATATTTCTTCGTCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGACTTTGTTCAATCATCTGTGTCAAATGCGGTAGAGCCTTCCCCACTATCTGAGCCAGAAGTTCCACTAGAAAACCCAAACCATCTTCATCGACTTGTGTCTGAAGGGGATGTTAGAGGTGTTAGAGATCTTCTTGCGAAAGCTGCATCAGAAAATGGTAGCTACTACCTATCTTCTTTATTGGATGCTCAAAATGCTGAAGGGCAAACTGCTCTTCATCTAGCTTGTAGACGGGGTAGTGCAGAACTTGTTGAAACTATTTTGGAGTACAATGAGGCAAATGTAGATGTCTTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGATCTCCAGAATGTGTCCATAGTCTTTTAAAAAGAAATGCTAATGTAAGGTCTCGGTTGAGAGATGGCTTTGGCCCTTCTGTTGCCCATGTTTGCGCTTATCATGGACAGCCAGATTGCATGCGAGAATTACTGTTGGCTGGAGCGGATCCTAATGCGTTGGATGATGAAGGAGAAACTGTACTGCATAGAGCAGTTGCCAAGAAGTACACAGACTGTGCTATTGTGATATTGGAAAATGGAGGCTGCAGATCAATGGGCATCTTAAATTCGAAGAATCTGACACCACTGCACTTGTCTGTGGCAACATGGAATGTGGCTGTTGTAAAAAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAGGCAATTGACATTCCAAACCCTATTGGCACTGCACTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAATTGAGGGCAGAGAATTGGTGCAGATATTGCTTGCTGCAGGAGCAGATCCATCTATGCATGATACGCAGAATGGGCGGACAGCTTTGCATACAGCTGCTATGACTAATGATGTTGAGTTGGTCAAGGTTATTCTTGCTGCTGGTGTTGATGTGAACATCCGCAATGTGCACAACAGTATACCTCTTCACTTAGCTCTAGCTAGGGGGGCAAAGTCATGTGTTGGATTGCTTCTATCTGCTGGGGCTGATTATAATTTGCAGGATGATGATGGTGACAATTCTTTCCATATAGCAGCAGAGACAGCAAAAATGATTCGTGAAAATCTTGATTGGCTCATTGTGATGCTAAGAAATCCTGATGCTGATGTTGAAGTGAGAAACCACAGTGGCAAGACACTACGTGATATCTTAGAGGCCCTTCCTCGAGAATGGATGTCTGAAGATCTGATGGAGGCACTAGCCAATAGAGGTGTTCATCTATCTTCTACAATATTTGAAGTGGGAGATTGGGTGAAGTTTAAAAGAACTGTCACAACTCCAACATATGGGTGGCAGGGTGCTAGACAAAAGAGTGTTGGCTTTGTGCAAAGTGTTCCTGACAGGGAGAATCTCATTGTGTCCTTTTGTTCTGGAGAGGCTCGTGTTTTGGCAAGTGAAGTTGTAAAAGTTATTCCATTAGACAGGGGCCAACATGTACAGCTCAAAACAGATGTGAAAGAGCCCAGGTTTGGTTGGCGTGGACAGTCACGTGACAGCGTTGGGACAGTTTTATGCGTTGATGATGATGGGATCCTCCGTGTAGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCATCCGAGATGGAACGGGTTGAGGAGTTCAAAGTTGGAGATTGGATTCGTATTCGCCCCACTCTCACATCTGCAAAGCATGGATTAGGGTCTGTGACACCAGGAAGCATTGGTATAGTGTATTGTATCAGACCAGACAGTAGTCTGTTAATTGAACTGAGCTATCTGCCAAATCCATGGCATTGTGAACCAGAAGAGGTTGAGCATGTTGCTCCTTTTAGGATTGGTGATCGGGTTTGTGTGAAGCGATCTGTTGCGGAACCTAGATATGCTTGGGGTGGAGAGACACATCATAGTGTTGGAAGAATAAGTGAGATAGAGAATGATGGTTTATTAATAATTGATATACCAAATCGACCCATACCATGGCAGGCTGATCCATCGGACATGGAGAAGGTGGAAGATTTCAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTGTCTTCTCCAAAGTATGGATGGGAGGATATTACAAAGAGCAGTATAGGGATAATTCATAGCTTGGAGGAGGATGGGGATATGGGTATTGCCTTTTGCTTCAGGAGCAAGCCTTTCTGTTGCTCTGTCACTGATGTGGAAAAGGTTCCCCCTTTTGAGGTGGGACAAGAGATTCATGTGATGCCATCTGTTACTCAGCCTCGGCTTGGATGGTCAAATGAATCACCAGCTTCTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCTCTAAATGTGAGAGTTACTGGTAGGCAGACCTTGTGGAAAGTTTCTCCTGGAGATTCAGAACGACTTCCTGGATTTGAAGTTGGTGATTGGGTACGCTCAAAACCAAGCCTGGGAACCAGACCAAGTTATGATTGGAATAGTGTTGGAAAAGAAAGCATAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGTAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTTGCTTTAAAGTTGGGCAGTATGTTAGGTTCAGAACTGGTTTGGTCGAACCAAGATGGGGCTGGAGAGGAGCTCAACCTGAATCACGAGGTGTTATTACTACTATACATGCTGATGGAGAAGTGAGGGTGGCATTCTTTGGTTTGCCAGGTTTGTGGAGAGGAGATCCTGTGGACCTTGAGATTGAGCACATGTTTGAAGTTGGAGAGTGGGTGAAGTTGAAAGATAATGCCGATGACTGGAAATCTGTTGGACCGGGTAGTATTGGCGTTGTACAAGGAATTGGGTATGAAGGTGATATATGGGATGGAAACATTCATGTTGGTTTTTGTGGGGAACAAGAAAGATGGGTAGGACCAACTTCCCATCTTGAAAGAGTTGAGAAACTCATTGTTGGACAAAAGGTTAGAGTTAAACAAACTGTAAAGCAGCCAAGATTTGGGTGGTCTGGACACACCCATGCTAGCATCGGAACCATATCAGCTATTGATGCTGATGGAAAGCTCCGAATATACACTCCAGCAGGATCAAAAGCATGGATGCTGGACCCATCAGAAGTAGATTTGGTAGAAGAGGAGAAGCTCCGGATTGGAGACTGGGTCAAGGTTAGATCATCTGTTTCAACCCCCACCCACCAATGGGGAGAAGTGAACCATTCAAGCATAGGGGTTGTGCATCGCATGGAAGATGATGATCTGTGGGTGGCGTTCTGTTTCACTGAGAGGCTATGGCTTTGCAAGGCATGGGAAATGGAAAGAGTTAGACCATTTAAAGTTGGGGATAAAGTAAAGATCCGAGATGGATTGGTATCGCCCCGGTGGGGATGGGGAATGGAGACACATGCTAGCAAGGGACAGGTGATTGGAGTAGATTCAAACGGTAAGATAAGAATTAAATTCCGATGGCGGGAAGGGAGGCCCTGGATAGGAGACCCTGCCGATATAATTCTCGATGAGAATTGA 4887 0.4612 MKVPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASPDTTLACPRCRHVSIVGNSVQALRKNYAVLALIHSASNASGSNFDCDFTDDDEEGADGGQEDGDNYNVSVMRRRCSRGSQTSSSGGCGPVIEVGVHQELKFLRRLGEGRRAGMEMWTSVIGGGGGNGPCRHQVAVKKVTIMEEMDLDWMQGQLENLRRASMWCRNVCTFHGAMRMEESLCLVMDRCYGSVQSEMQRNEGRLTLDQVLRYGADIARGVAELHAAGIVCMNLKPSNLLLDANGRAVISDYGLATILKKPSCRKARPECDNSSKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDAIGISAESDAWSFGCTLVEMCTGSVPWSGLSAEEIYRAVVKGKKLPPQYASVVGGGIPRELWKMIGECLQFKPAKRPSFNAMLAIFLRHLQEIPRSPPASPDNDFVQSSVSNAVEPSPLSEPEVPLENPNHLHRLVSEGDVRGVRDLLAKAASENGSYYLSSLLDAQNAEGQTALHLACRRGSAELVETILEYNEANVDVLDKDGDPPLVFALAAGSPECVHSLLKRNANVRSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNALDDEGETVLHRAVAKKYTDCAIVILENGGCRSMGILNSKNLTPLHLSVATWNVAVVKRWVEVATSDEIAEAIDIPNPIGTALCMAAASKKDHEIEGRELVQILLAAGADPSMHDTQNGRTALHTAAMTNDVELVKVILAAGVDVNIRNVHNSIPLHLALARGAKSCVGLLLSAGADYNLQDDDGDNSFHIAAETAKMIRENLDWLIVMLRNPDADVEVRNHSGKTLRDILEALPREWMSEDLMEALANRGVHLSSTIFEVGDWVKFKRTVTTPTYGWQGARQKSVGFVQSVPDRENLIVSFCSGEARVLASEVVKVIPLDRGQHVQLKTDVKEPRFGWRGQSRDSVGTVLCVDDDGILRVGFPGASRGWKADPSEMERVEEFKVGDWIRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIDIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITKSSIGIIHSLEEDGDMGIAFCFRSKPFCCSVTDVEKVPPFEVGQEIHVMPSVTQPRLGWSNESPASVGKIVRIDMDGALNVRVTGRQTLWKVSPGDSERLPGFEVGDWVRSKPSLGTRPSYDWNSVGKESIAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPCFKVGQYVRFRTGLVEPRWGWRGAQPESRGVITTIHADGEVRVAFFGLPGLWRGDPVDLEIEHMFEVGEWVKLKDNADDWKSVGPGSIGVVQGIGYEGDIWDGNIHVGFCGEQERWVGPTSHLERVEKLIVGQKVRVKQTVKQPRFGWSGHTHASIGTISAIDADGKLRIYTPAGSKAWMLDPSEVDLVEEEKLRIGDWVKVRSSVSTPTHQWGEVNHSSIGVVHRMEDDDLWVAFCFTERLWLCKAWEMERVRPFKVGDKVKIRDGLVSPRWGWGMETHASKGQVIGVDSNGKIRIKFRWREGRPWIGDPADIILDEN 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1274 1628 SUPERFAMILY Ankyrin repeat 510 837 IPR036770 -
Lele29g1274 1628 CDD RING-HC_ScPSH1_like 5 52 - -
Lele29g1274 1628 SMART ANK_2a 584 613 IPR002110 GO:0005515
Lele29g1274 1628 SMART ANK_2a 763 792 IPR002110 GO:0005515
Lele29g1274 1628 SMART ANK_2a 652 683 IPR002110 GO:0005515
Lele29g1274 1628 SMART ANK_2a 730 759 IPR002110 GO:0005515
Lele29g1274 1628 SMART ANK_2a 796 831 IPR002110 GO:0005515
Lele29g1274 1628 SMART ANK_2a 549 578 IPR002110 GO:0005515
Lele29g1274 1628 SMART ANK_2a 617 648 IPR002110 GO:0005515
Lele29g1274 1628 SMART ANK_2a 690 725 IPR002110 GO:0005515
Lele29g1274 1628 SMART ANK_2a 515 545 IPR002110 GO:0005515
Lele29g1274 1628 FunFam E3 ubiquitin-protein ligase KEG 455 685 - -
Lele29g1274 1628 ProSiteProfiles Ankyrin repeat region circular profile. 763 795 - -
Lele29g1274 1628 FunFam E3 ubiquitin-protein ligase KEG 228 445 - -
Lele29g1274 1628 MobiDBLite consensus disorder prediction 446 461 - -
Lele29g1274 1628 Pfam Ankyrin repeats (many copies) 587 636 IPR002110 GO:0005515
Lele29g1274 1628 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1627 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Lele29g1274 1628 FunFam E3 ubiquitin-protein ligase KEG 729 862 - -
Lele29g1274 1628 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Lele29g1274 1628 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Lele29g1274 1628 ProSiteProfiles Ankyrin repeat profile. 730 762 IPR002110 GO:0005515
Lele29g1274 1628 Pfam RING-type zinc-finger 6 49 IPR027370 -
Lele29g1274 1628 Pfam Protein kinase domain 172 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g1274 1628 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Lele29g1274 1628 ProSiteProfiles Protein kinase domain profile. 140 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g1274 1628 SMART ring_2 6 51 IPR001841 -
Lele29g1274 1628 Gene3D - 469 645 IPR036770 -
Lele29g1274 1628 Gene3D - 646 763 IPR036770 -
Lele29g1274 1628 Gene3D Transferase(Phosphotransferase) domain 1 227 457 - -
Lele29g1274 1628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Lele29g1274 1628 MobiDBLite consensus disorder prediction 442 472 - -
Lele29g1274 1628 ProSiteProfiles Ankyrin repeat region circular profile. 515 539 - -
Lele29g1274 1628 ProSiteProfiles Ankyrin repeat profile. 515 548 IPR002110 GO:0005515
Lele29g1274 1628 ProSiteProfiles Ankyrin repeat profile. 763 795 IPR002110 GO:0005515
Lele29g1274 1628 Pfam Mind bomb SH3 repeat domain 1504 1622 IPR040847 -
Lele29g1274 1628 Pfam Mind bomb SH3 repeat domain 871 989 IPR040847 -
Lele29g1274 1628 Pfam Mind bomb SH3 repeat domain 1051 1115 IPR040847 -
Lele29g1274 1628 Pfam Mind bomb SH3 repeat domain 1374 1495 IPR040847 -
Lele29g1274 1628 Pfam Mind bomb SH3 repeat domain 1121 1239 IPR040847 -
Lele29g1274 1628 Pfam Mind bomb SH3 repeat domain 1247 1368 IPR040847 -
Lele29g1274 1628 SUPERFAMILY RING/U-box 5 57 - -
Lele29g1274 1628 PRINTS Ankyrin repeat signature 516 531 IPR002110 GO:0005515
Lele29g1274 1628 PRINTS Ankyrin repeat signature 779 793 IPR002110 GO:0005515
Lele29g1274 1628 SUPERFAMILY Protein kinase-like (PK-like) 142 445 IPR011009 -
Lele29g1274 1628 Pfam Ankyrin repeats (3 copies) 709 794 IPR002110 GO:0005515
Lele29g1274 1628 Pfam Ankyrin repeats (3 copies) 495 577 IPR002110 GO:0005515
Lele29g1274 1628 Gene3D - 764 862 IPR036770 -
Lele29g1274 1628 ProSiteProfiles Ankyrin repeat region circular profile. 730 761 - -
Lele29g1274 1628 ProSiteProfiles Ankyrin repeat profile. 549 581 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1274 Lele-ChrLele29 18870481 18885470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1274 148 428 MAP Kinase Kinase Kinase AT4G08500 25.784 3.78e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Lele29g1274 Pkinase 1e-29 CL0016