Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1272 ATGTCTGAGATAAAGATGGATGAACTGGGTGAATTTGGAGAGAGGCCTATTTTCAGAGATATAAGACGCTACTTCTGTGAGTACTGTGGTATCTGTCGATCCAAAAAGACCCTGATAACCAGTCATATCAATTCTTGCCACAAGGAGGAGTTGGAAAGAGATCGAGTGGAGAAAGATCATGAAGCTGGGAGCACCAAATCCAACACTTGCAAGGAATGTGGTGCTAGTTTCAAAAAGCCAGCCTATTTGATGCAGCACATGCTAAGCCATTCTCTTGAGATGGGAGACCTCTTGAGAAGCTCCATCAAGGGTGTCTCGGTCACGCTATTTAATGAGAGGCAATATGTGTGTTCTATTGATGACTGTCAAGCCAGTTATAGAAGAAAGGTTCACTTGACTCGTCACCTTCTGCAGCATAAAGGGAAAACTTTTAAATGTCCAATCATGGATTGCAACCGGAACTTTTCTTTCCAAGGGAATATGACAAGACATGTCAAAGAATTTCATAATGGGAATTCCACCCCCTCTAAAGTTGAAACTCAGAAGCAGCATGAGTGCCCAGAAATTGGCTGTGGAAAGGTTTTCAAATATGCTTCAAAGCTACAAAAGCATGAAAATTGTCATGTTAAGCTGGACTCAATGGAGGTACTCTGCTTGGATCCTGGTTGCATGAAACATTTTACCAATGTCCAGTGCCTTAAAGCCCATATCAAAACCTGTCATCAATTTGTCACCTGTGAGACTTGTGGGAAAAAGGAACTGAGGAAGAATATCAAGCGGCACTTCCGTTCGCATGAAACTAGTTCTTCATCAAAGGCATTTAAATGTGAACACAAGGGTTGTAGCAGCACATTCACTAGTAAATCCAATCATCATAAGCATGTAAAGGCTGTACACTTGAAAGAAAAACCATTTGTATGTGGCTTTCCTGATTGTGGCATGAGATTTTCCTACAAAAATGTGCGGGACAACCATGAAAAGACACACGTTTATACACTTGGGGATTTTGAAGAATCTGATGAACAATTCAGGTCAATGCCAAGGGGAGGGCGAAAGAGAAATTGTCCTACCATTGAAATGTTAGTTAGGAAAAGGGTCACTCCTCCCAATCAATTAGAGTCCTGTTTGTTTGGAGAGGATACAGAGTAG 1149 0.4151 MSEIKMDELGEFGERPIFRDIRRYFCEYCGICRSKKTLITSHINSCHKEELERDRVEKDHEAGSTKSNTCKECGASFKKPAYLMQHMLSHSLEMGDLLRSSIKGVSVTLFNERQYVCSIDDCQASYRRKVHLTRHLLQHKGKTFKCPIMDCNRNFSFQGNMTRHVKEFHNGNSTPSKVETQKQHECPEIGCGKVFKYASKLQKHENCHVKLDSMEVLCLDPGCMKHFTNVQCLKAHIKTCHQFVTCETCGKKELRKNIKRHFRSHETSSSSKAFKCEHKGCSSTFTSKSNHHKHVKAVHLKEKPFVCGFPDCGMRFSYKNVRDNHEKTHVYTLGDFEESDEQFRSMPRGGRKRNCPTIEMLVRKRVTPPNQLESCLFGEDTE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1272 382 SUPERFAMILY beta-beta-alpha zinc fingers 142 170 IPR036236 -
Lele29g1272 382 SMART c2h2final6 115 139 IPR013087 -
Lele29g1272 382 SMART c2h2final6 274 299 IPR013087 -
Lele29g1272 382 SMART c2h2final6 244 265 IPR013087 -
Lele29g1272 382 SMART c2h2final6 144 169 IPR013087 -
Lele29g1272 382 SMART c2h2final6 216 241 IPR013087 -
Lele29g1272 382 SMART c2h2final6 184 208 IPR013087 -
Lele29g1272 382 SMART c2h2final6 305 329 IPR013087 -
Lele29g1272 382 SMART c2h2final6 24 47 IPR013087 -
Lele29g1272 382 SMART c2h2final6 68 90 IPR013087 -
Lele29g1272 382 Gene3D Classic Zinc Finger 110 141 - -
Lele29g1272 382 SUPERFAMILY beta-beta-alpha zinc fingers 299 330 IPR036236 -
Lele29g1272 382 Gene3D Classic Zinc Finger 247 302 - -
Lele29g1272 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 144 IPR013087 -
Lele29g1272 382 Gene3D Classic Zinc Finger 14 95 - -
Lele29g1272 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Lele29g1272 382 Gene3D Classic Zinc Finger 171 244 - -
Lele29g1272 382 ProSitePatterns Zinc finger C2H2 type domain signature. 146 169 IPR013087 -
Lele29g1272 382 ProSitePatterns Zinc finger C2H2 type domain signature. 186 208 IPR013087 -
Lele29g1272 382 ProSitePatterns Zinc finger C2H2 type domain signature. 307 329 IPR013087 -
Lele29g1272 382 Gene3D Classic Zinc Finger 303 329 - -
Lele29g1272 382 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Lele29g1272 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 304 IPR013087 -
Lele29g1272 382 SUPERFAMILY beta-beta-alpha zinc fingers 67 139 IPR036236 -
Lele29g1272 382 Gene3D Classic Zinc Finger 142 170 - -
Lele29g1272 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 174 IPR013087 -
Lele29g1272 382 FunFam Zinc finger 45-like 66 91 - -
Lele29g1272 382 ProSitePatterns Zinc finger C2H2 type domain signature. 218 241 IPR013087 -
Lele29g1272 382 ProSitePatterns Zinc finger C2H2 type domain signature. 276 299 IPR013087 -
Lele29g1272 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 305 329 IPR013087 -
Lele29g1272 382 Pfam Zinc finger, C2H2 type 69 90 IPR013087 -
Lele29g1272 382 Pfam Zinc finger, C2H2 type 115 139 IPR013087 -
Lele29g1272 382 Pfam Zinc finger, C2H2 type 184 205 IPR013087 -
Lele29g1272 382 Pfam Zinc finger, C2H2 type 144 169 IPR013087 -
Lele29g1272 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 213 IPR013087 -
Lele29g1272 382 PANTHER ZINC FINGER PROTEIN 14 372 - -
Lele29g1272 382 SUPERFAMILY beta-beta-alpha zinc fingers 257 309 IPR036236 -
Lele29g1272 382 SUPERFAMILY beta-beta-alpha zinc fingers 181 210 IPR036236 -
Lele29g1272 382 ProSitePatterns Zinc finger C2H2 type domain signature. 117 139 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1272 Lele-ChrLele29 18858633 18861375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1272 112 332 C2H2 Transcription Factor Family AT1G72050 50.545 2.28e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele29g1272 zf-C2H2 0.00086 CL0361