Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele29g1210 | ATGCCGAAGAAGAAGAAGCATAGTGACAGTGACGAAGAAGACATCTTCTATTACCGCTATGCTTCCGCTTCAGCTTCTTCAGCACCTTCCTCAAACCCCACTAGAACCTTGAAGGCTCACAGCGGCTCTGGCAGGTTAGCTCCCTCTAAATCGACCCTTTATGTCTCCAACCTCGACTTCTCCCTCACTAACTCTGATCTAAACACTCTCTTCTCCACCTTCGGAAAGATAGCTCGAGTCACCGTCCTCAAGGACCGAGTCACTCGCCAGAGTCGTGGCGTTGCTTTCATTCAATATGTTTCTCGCGATGATGCACAAAAGGCTGCTCGTGAGATGAACTGCAAAATCCTCAATGGTAGGACCTTGACTGCTTCCATTGCTGCTGATAACGGTCGAGCTCCAGAATTTATAAAGAAAAGGGTTTATATGGATAAGAGTCGGTGTTATGAGTGTGGGGAAGGAGGACATTTGTCTTATGAGTGTCCTAGGAATCAATTGGGGCCCAGGGAGCGTCCCGTTCCCAAGCGTGAACGGCGTGGTGGTGGGGGTGACCATGGGGGTGTGTACCGGCCAACGGAGGAGGATGACAACGGATCTGATGGTGGGGATCAGTTTGAGGATGATAATTGGGCTTCTATTGTGGATAATGGGGCGGATGAAAGGTTGCTGATGGGTAATGAGAAGGTTGTGGAGAAGAATAAGGCAAAGAAAGCAAGCTATTTCAGTGATGAGAGTGGTGATGAAGATGATTGA | 753 | 0.4887 | MPKKKKHSDSDEEDIFYYRYASASASSAPSSNPTRTLKAHSGSGRLAPSKSTLYVSNLDFSLTNSDLNTLFSTFGKIARVTVLKDRVTRQSRGVAFIQYVSRDDAQKAAREMNCKILNGRTLTASIAADNGRAPEFIKKRVYMDKSRCYECGEGGHLSYECPRNQLGPRERPVPKRERRGGGGDHGGVYRPTEEDDNGSDGGDQFEDDNWASIVDNGADERLLMGNEKVVEKNKAKKASYFSDESGDEDD | 250 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele29g1210 | 250 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 51 | 129 | IPR000504 | GO:0003723 | |
Lele29g1210 | 250 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 53 | 122 | IPR000504 | GO:0003723 | |
Lele29g1210 | 250 | SUPERFAMILY | RNA-binding domain, RBD | 48 | 134 | IPR035979 | GO:0003676 | |
Lele29g1210 | 250 | SMART | rrm1_1 | 52 | 125 | IPR000504 | GO:0003723 | |
Lele29g1210 | 250 | MobiDBLite | consensus disorder prediction | 160 | 213 | - | - | |
Lele29g1210 | 250 | FunFam | Zinc finger CCHC-type and RNA-binding motif-containing protein 1 | 137 | 181 | - | - | |
Lele29g1210 | 250 | Gene3D | - | 138 | 172 | - | - | |
Lele29g1210 | 250 | PANTHER | ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 | 6 | 249 | IPR044598 | GO:0000398|GO:0005689 | |
Lele29g1210 | 250 | Gene3D | - | 25 | 207 | IPR012677 | - | |
Lele29g1210 | 250 | ProSiteProfiles | Zinc finger CCHC-type profile. | 147 | 163 | IPR001878 | GO:0003676|GO:0008270 | |
Lele29g1210 | 250 | MobiDBLite | consensus disorder prediction | 23 | 45 | - | - | |
Lele29g1210 | 250 | CDD | RRM_ZCRB1 | 50 | 127 | IPR034219 | - | |
Lele29g1210 | 250 | Pfam | Zinc knuckle | 147 | 162 | IPR001878 | GO:0003676|GO:0008270 | |
Lele29g1210 | 250 | SUPERFAMILY | Retrovirus zinc finger-like domains | 132 | 164 | IPR036875 | GO:0003676|GO:0008270 | |
Lele29g1210 | 250 | FunFam | U11/U12 small nuclear ribonucleoprotein 31 kDa protein | 1 | 135 | - | - | |
Lele29g1210 | 250 | MobiDBLite | consensus disorder prediction | 169 | 197 | - | - | |
Lele29g1210 | 250 | SMART | rrm2_1 | 52 | 125 | IPR003954 | GO:0003676 | |
Lele29g1210 | 250 | SMART | c2hcfinal6 | 147 | 163 | IPR001878 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele29g1210 | Lele-ChrLele29 | 15356614 | 15357366 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele29g1210 | 51 | 127 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 36.364 | 4.37e-08 | 51.6 |