Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1210 ATGCCGAAGAAGAAGAAGCATAGTGACAGTGACGAAGAAGACATCTTCTATTACCGCTATGCTTCCGCTTCAGCTTCTTCAGCACCTTCCTCAAACCCCACTAGAACCTTGAAGGCTCACAGCGGCTCTGGCAGGTTAGCTCCCTCTAAATCGACCCTTTATGTCTCCAACCTCGACTTCTCCCTCACTAACTCTGATCTAAACACTCTCTTCTCCACCTTCGGAAAGATAGCTCGAGTCACCGTCCTCAAGGACCGAGTCACTCGCCAGAGTCGTGGCGTTGCTTTCATTCAATATGTTTCTCGCGATGATGCACAAAAGGCTGCTCGTGAGATGAACTGCAAAATCCTCAATGGTAGGACCTTGACTGCTTCCATTGCTGCTGATAACGGTCGAGCTCCAGAATTTATAAAGAAAAGGGTTTATATGGATAAGAGTCGGTGTTATGAGTGTGGGGAAGGAGGACATTTGTCTTATGAGTGTCCTAGGAATCAATTGGGGCCCAGGGAGCGTCCCGTTCCCAAGCGTGAACGGCGTGGTGGTGGGGGTGACCATGGGGGTGTGTACCGGCCAACGGAGGAGGATGACAACGGATCTGATGGTGGGGATCAGTTTGAGGATGATAATTGGGCTTCTATTGTGGATAATGGGGCGGATGAAAGGTTGCTGATGGGTAATGAGAAGGTTGTGGAGAAGAATAAGGCAAAGAAAGCAAGCTATTTCAGTGATGAGAGTGGTGATGAAGATGATTGA 753 0.4887 MPKKKKHSDSDEEDIFYYRYASASASSAPSSNPTRTLKAHSGSGRLAPSKSTLYVSNLDFSLTNSDLNTLFSTFGKIARVTVLKDRVTRQSRGVAFIQYVSRDDAQKAAREMNCKILNGRTLTASIAADNGRAPEFIKKRVYMDKSRCYECGEGGHLSYECPRNQLGPRERPVPKRERRGGGGDHGGVYRPTEEDDNGSDGGDQFEDDNWASIVDNGADERLLMGNEKVVEKNKAKKASYFSDESGDEDD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1210 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Lele29g1210 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Lele29g1210 250 SUPERFAMILY RNA-binding domain, RBD 48 134 IPR035979 GO:0003676
Lele29g1210 250 SMART rrm1_1 52 125 IPR000504 GO:0003723
Lele29g1210 250 MobiDBLite consensus disorder prediction 160 213 - -
Lele29g1210 250 FunFam Zinc finger CCHC-type and RNA-binding motif-containing protein 1 137 181 - -
Lele29g1210 250 Gene3D - 138 172 - -
Lele29g1210 250 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 6 249 IPR044598 GO:0000398|GO:0005689
Lele29g1210 250 Gene3D - 25 207 IPR012677 -
Lele29g1210 250 ProSiteProfiles Zinc finger CCHC-type profile. 147 163 IPR001878 GO:0003676|GO:0008270
Lele29g1210 250 MobiDBLite consensus disorder prediction 23 45 - -
Lele29g1210 250 CDD RRM_ZCRB1 50 127 IPR034219 -
Lele29g1210 250 Pfam Zinc knuckle 147 162 IPR001878 GO:0003676|GO:0008270
Lele29g1210 250 SUPERFAMILY Retrovirus zinc finger-like domains 132 164 IPR036875 GO:0003676|GO:0008270
Lele29g1210 250 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 135 - -
Lele29g1210 250 MobiDBLite consensus disorder prediction 169 197 - -
Lele29g1210 250 SMART rrm2_1 52 125 IPR003954 GO:0003676
Lele29g1210 250 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1210 Lele-ChrLele29 15356614 15357366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1210 51 127 Eukaryotic Initiation Factors Gene Family AT1G49760 36.364 4.37e-08 51.6