Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1197 ATGAGGGCTCAACACCCTAGAAGGAACTTTAAGTTAGAAACAACAGAAGGGACACAGGTACCATTGAATATAATCAGGCAGCAAATTGTTATTCTGATCATGGATATAGATCTTAGGTTACCTTCTGGTGAACATGATAAAGAGGCTGAAGAGCCAAATACAATTGATAACATATTGGATGGTGATGAAAAATTGCATAATGTGGACATAGAAGGAAGAAATATAGTTGATGCTGGTGTACCTACTCTAGATGGAGGAGATTTGAATTCACCAACATTGGATATGGAAATATTTAAGGAAGATACAAATCTTGAACCACTTTCTGGCATGGAATTTGATTCTCATGGGGAAGCTTATTCTTTCTACCAAGAGTATGCTCGGTCAGTGGGATTCAATACTGCAATTCAAAATAGTCGCCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACTAAACGGGAGTATGACAACAAATCATTCAATCGACCACGAGCACGACAGAATAAGCAGGAGTCTGAAAATTCAACTGGCAGGAGATCTTGTTCAAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGTTTTGTGAAGGAGCATAATCATGAGCTTTTTCCCGCCCAAGCTGTCAGTGAACAAGCAAGGAAAATGTATGCTGCAATGGCTAGACAGTTTGCTGAATACAAAACTGTAGTTGGTCTAAAAAATGAGAAAAGTCCATTTGATAAAGGTCGGAATTTAGGCCTAGAGACAGGGGATGTCAAACTTCTGCTTGACTTCTTCATACAGATGCAAAACATGAATTCTAACTTCTTTTATGCTTTGGACATTGGTGAGGATCAACGGGTGAAAAGCCTTTTATGGCTTGATGCTAAATGTAGGCATGACTATATCAACTTTTATGATGTAGTTTCTTTTGATACCACCTATGTGAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGAGTAAATCAGCATTATCAATTTATGTTGCTCGGGTGTGCCTTGATATCGGATGAAACAGCCACAACTTATTCTTGGCTAATGCAGACGTGGCTGAAAGCAGTTGGTGGTCAAGTTCCAAAAGTGATCATTACTGAGCATGACAAGACACTCAACTCAGTTATTTCAGATGTCTTCCCCCGTTCTCATCATTGTATGTGCCTATGGCACATATTGGGGAAGGTAACTGAAAATTTGGGTCATGTCATTAAACAACATGAGAATTTTATGGCAAAGTTTGAAAAATGCATCCATAGGTCATGGACAAGGGATGAGTTTGAGAAGAGGTGGTGGAAAATGGTTGATAGGTTTGAACTCCGAGGGGACAATTGCATGCAGACATTGTATGAAGATTGCAATTTGTGGGTGCCAACATTCATGAAGGATGTATTTTTAGGTGGTATGTCTACCATCCAGCGATCTGAAAGTATAAATTCCTTCTTTGATAAATATGTTCACAAGAAGACCTCTGTACAAGATTTTGTCAGACAGTATGAATCAATATTGCAAGACAGGTACGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAAGTGGCAACATTGAAAACTCCTTCACCTTTAGAGAAGAGTGTTGCAGGAATTTACACACATGCAGTATTTAAGAAGATTCAGATTGAGGTTATTGGTGCAGTTGCTTGTCATCCTAAAGCTGAAAGACGGGATGGGACAAGCATTACTTACAAGGTTCATGATATGGAAAGGAATCAAGAATTCACAGTTGTGTTGAATGAACTAAAATCAGAGGTGTCTTGTATATGTCGGTTATTTGAATATAAAGGTTATCTTTGTCGACATGCATTGATTGTTCTACAGTATTCTCGCCTTTCAGCAATTCCTTCTCAATACATTTTGAAAAGGTGGACAAGAGATGCAAAGTCAAGGAATTTACTTGGGGAAGAATCTGAACATATTCTGGCTAGGGTGCAACGGTACAATGATTTATGTCAGAGAGCACTTAAACTGGGCGAAGAGGGATCTCTGTCTCAAGAGAGTTATAGTATTGCATTCCATGCACTTCATGAGGCATATGCAAGTTGTGTGAGTGTCAACAATTCCAGTAAAGATCCTCCTGAAGCAGGCACGTCAGCTGGTCATGGTCAGCTTTCCACTGAAGAAGATACCCAGACTAAAAATATGGGCAAGACAAACAGAAAAAAGAACCCAGCTAAAAAGAAAAAGTTGAACTCTGAGGCAGAAGTGATGACTGTTGGGGCTCAAGACAATTTGCAACAAATGGACAAGTTCAGCGCAAGGGCTGTAACACTTGATGGTTATTATGGTGCTCAACAGAGTGTACAGGGAATGTTAAACTTGATGGGACCAACTCGTGATAATTACTATGGAAATCAACAGACTATTCAGGGCCTGGGACAATTAAGTTCTATACCACCAAGCCACGATGGTTATTACGGTGCTCATCAGAGCATGCCTGGTCTGGCACAACTGGATTTTTTCCGATCATCAACAGGTTTCGCATATGGCATTCGGGATGATCCTAACGTAAGAGCAGCACAGTTGCATGAGGATCCATCAAGACATGCATGA 2631 0.3957 MRAQHPRRNFKLETTEGTQVPLNIIRQQIVILIMDIDLRLPSGEHDKEAEEPNTIDNILDGDEKLHNVDIEGRNIVDAGVPTLDGGDLNSPTLDMEIFKEDTNLEPLSGMEFDSHGEAYSFYQEYARSVGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDNKSFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELFPAQAVSEQARKMYAAMARQFAEYKTVVGLKNEKSPFDKGRNLGLETGDVKLLLDFFIQMQNMNSNFFYALDIGEDQRVKSLLWLDAKCRHDYINFYDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDETATTYSWLMQTWLKAVGGQVPKVIITEHDKTLNSVISDVFPRSHHCMCLWHILGKVTENLGHVIKQHENFMAKFEKCIHRSWTRDEFEKRWWKMVDRFELRGDNCMQTLYEDCNLWVPTFMKDVFLGGMSTIQRSESINSFFDKYVHKKTSVQDFVRQYESILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGIYTHAVFKKIQIEVIGAVACHPKAERRDGTSITYKVHDMERNQEFTVVLNELKSEVSCICRLFEYKGYLCRHALIVLQYSRLSAIPSQYILKRWTRDAKSRNLLGEESEHILARVQRYNDLCQRALKLGEEGSLSQESYSIAFHALHEAYASCVSVNNSSKDPPEAGTSAGHGQLSTEEDTQTKNMGKTNRKKNPAKKKKLNSEAEVMTVGAQDNLQQMDKFSARAVTLDGYYGAQQSVQGMLNLMGPTRDNYYGNQQTIQGLGQLSSIPPSHDGYYGAHQSMPGLAQLDFFRSSTGFAYGIRDDPNVRAAQLHEDPSRHA 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1197 876 Pfam FAR1 DNA-binding domain 120 223 IPR004330 -
Lele29g1197 876 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 100 708 IPR031052 GO:0006355
Lele29g1197 876 MobiDBLite consensus disorder prediction 712 738 - -
Lele29g1197 876 MobiDBLite consensus disorder prediction 712 759 - -
Lele29g1197 876 MobiDBLite consensus disorder prediction 163 196 - -
Lele29g1197 876 ProSiteProfiles Zinc finger SWIM-type profile. 600 636 IPR007527 GO:0008270
Lele29g1197 876 Pfam SWIM zinc finger 602 634 IPR007527 GO:0008270
Lele29g1197 876 Pfam MULE transposase domain 320 412 IPR018289 -
Lele29g1197 876 SMART 26again6 611 638 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1197 Lele-ChrLele29 14174637 14179481 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lele29g1197 FAR1 6.5e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1197 29 14174637 14179481 Lele31g0365 31 10850004 10853424 hybridization