Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1192 ATGCTTTCACTGAAAGAGCACCACGCTTGTATTCTTCTCATTCATCATCGTTGGAATGTGGTGAACCTTTTTGCAGTATACGTAGAAAAGGGAAAACCCGCCTTGTTCGCTGAAGCTGGTCTTACTGTGTATGAACCATCCGGGTCAGATCCTCCATCATCTTCTTCTTCAGTTCCTTCTTCAGTGTCGTGTGAGATCTGCATAGAGAATGTTCCAAGCTATGAGGTAACAAGAATGGATTGTGGTCACTTTTTCTGCAACAATTGCTGGACACGTCACTTTATCGTTAAGATAAATGACGGCCAAAGCAAGCATATAACTTGCATGGCACACAAATGTAACGCGATCTGCGATGAAGATGTTGTGAGAGAGCTTGTCGGTAAAGAACATCCTGGAATCGCGGAGAGATTCAACCGGTTTCTTCTGGAATCGTACATTGAAGACAAGAAAGTCAAATGGTGCCCTAGCATTCCTCGTTGTGGGAATGCAATACGTGTTGAGGAAGATGATGAAGCATGTGAGGTTGAATGTTGTGGTTTACAGTTTTGTTTCAGTTGCTCCTCACACGGATTCATTAAAGAGACTATGCAAGGGAAGGTTGCTCTTTCAGAGGAGAAGAATGCTTCAAAGCTCAGAGATTATAGCTGGGTTAATAATGGACTCTCAAGACTGTTCAGAACGAGGCGTGTGTTATCATATTCGTACCCATTTGCATATTATATGTTTGGAGGTGAGATTTTTAAGGATGAGATGTCTGAAGAGGAAACGGAAAGTAAACAGAACTTGTTTGAGGATCAGCAGCAGCAACTGGAGGCAAATATTGAGAGGCTTGCAAAATTCTTGGAGGAACCCTTTGATCAGTTTGAAGATGATAAGGTAATGGAAATAAGGATTCAAGTGATTAACCACTCAAAAGTTGTTGATAATCTGTGCCAGAAAATGTATGAGTGCACTGAGACTGATTTATTGGGCTCTCTTAATCATCCTATGAATATTGCTCCTTACAAATCAAAGGGCACAGAGAAAGCATCTCAACTTTCAGCTTCTTCCGAAATTAATTAG 1062 0.4124 MLSLKEHHACILLIHHRWNVVNLFAVYVEKGKPALFAEAGLTVYEPSGSDPPSSSSSVPSSVSCEICIENVPSYEVTRMDCGHFFCNNCWTRHFIVKINDGQSKHITCMAHKCNAICDEDVVRELVGKEHPGIAERFNRFLLESYIEDKKVKWCPSIPRCGNAIRVEEDDEACEVECCGLQFCFSCSSHGFIKETMQGKVALSEEKNASKLRDYSWVNNGLSRLFRTRRVLSYSYPFAYYMFGGEIFKDEMSEEETESKQNLFEDQQQQLEANIERLAKFLEEPFDQFEDDKVMEIRIQVINHSKVVDNLCQKMYECTETDLLGSLNHPMNIAPYKSKGTEKASQLSASSEIN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1192 353 Pfam IBR domain, a half RING-finger domain 135 187 IPR002867 -
Lele29g1192 353 Pfam Ariadne domain 192 350 IPR045840 -
Lele29g1192 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 148 IPR013083 -
Lele29g1192 353 Gene3D - 191 323 - -
Lele29g1192 353 SUPERFAMILY RING/U-box 61 147 - -
Lele29g1192 353 SMART ibrneu5 135 191 IPR002867 -
Lele29g1192 353 Coils Coil 253 283 - -
Lele29g1192 353 FunFam RBR-type E3 ubiquitin transferase 59 149 - -
Lele29g1192 353 CDD RING-HC_RBR_TRIAD1_like 64 113 - -
Lele29g1192 353 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 8 187 IPR031127 GO:0004842|GO:0016567
Lele29g1192 353 ProSiteProfiles Zinc finger RING-type profile. 64 112 IPR001841 -
Lele29g1192 353 ProSiteProfiles TRIAD supradomain profile. 60 188 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1192 Lele-ChrLele29 14028852 14030221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1192 192 349 ARIADNE family AT2G16090 66.038 4.28e-66 214