Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1187 ATGGACGACCACGGGTGCAGCGATGATGACGATTATAATTACTCCGATCAGGGTTCAGTGGAAGAGGAAGGCTTTGAAGAAAATTTCGACGGCGGCGGCGACGATATCGAGTTGGCCAAGGCTGAAAAAAAGGGTCCCACAAGTCTGGTGATCACAAGAGAATCACTTGTCACTGCTCAGAAAGAAGATCTCCGGCGAGTAATGGAGATGCTTTCACTGAAAGAGCACTACGCTCGTGTTCTTCTCATTCATCATCGTTGGGATGCGGAGAAGCTTTTTGTAGTGTACGTAGAAAAGGGAAAAACCGTCTTGTTCGCTCAAGCCGGTCTTCCTGTGTATGAACCGTCCTGTTCAGACCCATCATCATCATCTTCATCACTTCCTTCTTCAGTGTTGTGTGAGATCTGCATCGAGAATGTTCCCAGCCACAAGGTAACAAGAATGGATTGTGGTCACTTTTTCTGCAACCATTGCTGGACACGTCACTTTATCGTTAAGATAAACGACGGCCAAAGTAAGCACATCAAATGCATGGCACACGAATGTAATGCGATTTGCGATGAAGATGTGGTTAGAGAGCTTGTAGGTAAAGCGCGTCCCAAAACGGCGGAGAGATTCGACCGGTTTCTTCTCGAATCCTACATTGAAGACAACAAGAGAGTAAAATGGTGCCCTAGCATTCCTCATTGCGGGAATGCAATACGTGTTGAGGAAGATGATGAAGTATGTGAGGTTGAATGTTGTTGTGGTTTGCAGTTTTGTTTCAGTTGTTCGTCGGAGGCTCATTCGCCGTGTTCTTGTCGGATGTGGGAGCTATGGTCTATCAAGTGTAGAGACGAATCAGAAACTGTTAATTGGATAACAGCTCACACAAAGCCTTGCCCTAAATGCAAGAAACCAGTGGAGAAGAATGGTGGCTGCAACTTGGTTAGTTGTATCTGTGGTCAACCATTTTGCTGGCTCTGCGGCAGAGCCACCAGCAGTGAACATACATGGTCAACTATAACCGGCCATAGTTGTGGCCATTACAAGCCACAAGAAGAACTAGCAGAACTTGCCAAGCGAAATCTGTATCGATATATGCATTATCATGATCGATTCAAAGCGCACACAGATTCGTTGACACTTGAAGGGAAGTTGAAAGAAACCATACAAGAGAAGGTTGCGAATTCAGAATCGAAGGTGGATGATTCGATTCTAAGAGATTATAGCTGGATTAATAATGGACTCTCGAGACTGTTCAGATCCAGGCGTGTGTTATCATATTCGTACCCATTTGCATATTATATGTTTGGAGGTGAGATTTGTACGGAGCAGATGTCTGAAGAGGAAAGGGAAAGGAAACAGAACTTGTTTGAGGATCAGCAGCAGCAACTTGAAGCAAATGTTGAGAAGCTTTCAAAATTTCTGGAGGAACCCTTTGATGAGTATGAAGATGATGAAGTCTTGAAAATAAGGATTCAAGTGATTAACCTCTCAAAGGTTGTTGATAATCTGTGCCATAAAATGTATGAGTGCATTGAGAATGATTTATTGGGCTCAATTCATATTAATATTGCTCCATACAAATCAGACGGTGTAGAGAAGGCATCTCAATTGTAA 1602 0.4357 MDDHGCSDDDDYNYSDQGSVEEEGFEENFDGGGDDIELAKAEKKGPTSLVITRESLVTAQKEDLRRVMEMLSLKEHYARVLLIHHRWDAEKLFVVYVEKGKTVLFAQAGLPVYEPSCSDPSSSSSSLPSSVLCEICIENVPSHKVTRMDCGHFFCNHCWTRHFIVKINDGQSKHIKCMAHECNAICDEDVVRELVGKARPKTAERFDRFLLESYIEDNKRVKWCPSIPHCGNAIRVEEDDEVCEVECCCGLQFCFSCSSEAHSPCSCRMWELWSIKCRDESETVNWITAHTKPCPKCKKPVEKNGGCNLVSCICGQPFCWLCGRATSSEHTWSTITGHSCGHYKPQEELAELAKRNLYRYMHYHDRFKAHTDSLTLEGKLKETIQEKVANSESKVDDSILRDYSWINNGLSRLFRSRRVLSYSYPFAYYMFGGEICTEQMSEEERERKQNLFEDQQQQLEANVEKLSKFLEEPFDEYEDDEVLKIRIQVINLSKVVDNLCHKMYECIENDLLGSIHINIAPYKSDGVEKASQL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1187 533 SUPERFAMILY RING/U-box 204 274 - -
Lele29g1187 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 217 IPR013083 -
Lele29g1187 533 MobiDBLite consensus disorder prediction 1 33 - -
Lele29g1187 533 SMART ibrneu5 275 340 IPR002867 -
Lele29g1187 533 SMART ibrneu5 204 267 IPR002867 -
Lele29g1187 533 Pfam IBR domain, a half RING-finger domain 204 267 IPR002867 -
Lele29g1187 533 Pfam IBR domain, a half RING-finger domain 282 326 IPR002867 -
Lele29g1187 533 ProSiteProfiles Zinc finger RING-type profile. 133 181 IPR001841 -
Lele29g1187 533 SUPERFAMILY RING/U-box 130 216 - -
Lele29g1187 533 ProSiteProfiles TRIAD supradomain profile. 129 344 IPR044066 -
Lele29g1187 533 MobiDBLite consensus disorder prediction 12 32 - -
Lele29g1187 533 Gene3D - 263 512 - -
Lele29g1187 533 FunFam RBR-type E3 ubiquitin transferase 128 218 - -
Lele29g1187 533 Pfam Ariadne domain 346 533 IPR045840 -
Lele29g1187 533 SUPERFAMILY RING/U-box 277 333 - -
Lele29g1187 533 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 416 IPR031127 GO:0004842|GO:0016567
Lele29g1187 533 FunFam RBR-type E3 ubiquitin transferase 263 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1187 Lele-ChrLele29 13933156 13934757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1187 68 533 ARIADNE family AT2G16090 69.362 0.0 666