Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1177 ATGGTTGTTGGGTATCTCTTGTTTCTGAAGCTGGTTTCAACGTTCAATCGAGTTGGCTTTGTTTGAGAATTTACTGTTTCTTCAAGGAAAAGAGTGATGGAGGAAAAGGAAGAAGGAAAGAATGAATTACAGCATGCGCCATCTTCAGTTGTTGTTGTAGGTATCAAGGGTAGCAGGAAAAGCAAAAGTATATTACAGTGGGCACTTAAGAGGTTTGTGCCTGAAGGGAGGATCATGTTTAAGCTGATACATGTTCATGCCAGTATAAAAGCAGTACCAACACCAATGGGAAATTTCATACCTATTTCACAAGTGCGTCCTGATGTAGCAAACGCCTTCAAAAAGGAAGTTAACTGGCAGAAAAGTCAAATGCTTCTACCCTATAAAAATATGTGTGACCAGAGAAAGATATATGCAGATGCAATGGTGATCGAATCTGATGATGTTGCAACTGCGATAGCAGAAGAAATTGCTAAGGGTTCTGCGACCAAACTTGTTATTGGAGCATCATCTCGTAGCATATTTTCTAGCAAGCTTAAGGGTATTGCTGCAAAAATATCAGTTTGTACTCCAAGATTCTGTACAGTCTATGCTATTTCCAAAGGAAAATTGTCTTCTGTACGGCCATCAGATATACAGATTGATGAGAACGTTGTAGATGACAGTAGTGAAACCAATGGTTCCACCAGTTCATCAAACTACAGTTCCACCTCTCAGTCAGACTCTACAACAGTTGCTTCATATGGTCCTTCAAATTCCTCTATAACAGAGCAGCGATTTCAAGCTCTTTCCTCAATTAATCAGACCATCCTAAGTGCAAATCCTAGTTTTATTGAATCTAACCATTCTAGATGTCAGTCCTTAGCTATTGGAACAGAGAATAATGTTACAAGTTTGTCTGCTAGAAGTTCTAGTATTGGCTATGGTCTCAGTCAGGCTTCTAGTTGCAAAAGCTTTAAATCAGAAACAGAATCTTGTGTTTATGTTCAAAATTTCACAATTGATGTGCCACCAGCAACTGAATCCCCTTCACCTGTTAGGCAGGAAAATATTAACCTTGAGCTGGAAAAGTTGAGGATTGAATTAAGACATGCCCAAGGACTGCATGCAATAGCTCGAAGTGAGAACACTGATGCATCAAGGAAGCTGAATGATTTAAATAAGAGGCGATCGGACGAATTAATGAAACTGAATGAGATTATTGCTAAGGAAGAGTTGGCAAAAGAATCATTAAGGCAAGACAAAGAGAAATATGAAGCTGCAAAAAGAGAAGCTGATTATGTGAAAGAATGTGCTGAAAGAGAAGCTGCAGAAAGAAGAGACATGCAGACTAAAGCTGTTCGTGCTGCACAAGAGAAAGAAAAACTAGAGTCTGCTCTTACTGGTTCGACGCCTCAGTACCATAAGTTTACATGGGACGATATTGTGTCTGCTACCTCATCTTTCTCTGAAGATCTGAGAATCGGAATGGGAGCGTATGGTACAGTGTACAAGTGTAATTTGCATCATACTGTTGTAGCTGTTAAAGTACTCCACTCTAAAGGGAGCCACAAAAGCAAGCAATTCCAGCAGGAGATAGAAATCTTGTCCAGAATTCGTCATCCTAATTTACTGCTCCTTCTTGGTGCATGTCCTGAAAATGGATGCCTTGTATATGAATATATGGAGAATGGTAGCTTGGAGGACCGGTTATTCAAGAAAAATGGTACGGCCCCAATTCCTTGGAACGAGAGGTACCGGATTGCATGGGAAGTAGCCTCAGCCCTTGCCTTTCTTCACAGCTCGAAGCCAACATCGATCATCCACCGTGATTTAAAACCAGCAAACATCTTGCTTGACAGTAACTTAGTGAGCAAGATTGGTGATATTGGTCTTTCTACTGTGCTCAATTCAGACGTCTCCTCTACAATGTACAAGGACACAGGGCCTGTTGGGACCCTTTGCTACATGGATCCCGAGTATCAAAGGACCGGGTTGATATCTCCAAAATCCGATGTGTATGCCTTTGGAATGGTGATCTTACAGTTATTGACAGCAAAACCAGCTATAGCACTCACTCATGTGGTAGAAACAGCAGTCGATGATGGAAGGCTCACAGATATATTGGACCCGGAAGCAGGAAGTTGGCCACTTCAGGAGACAATGGACTTAGCTCGACTAGGCCTTAGCTGTACAGAACTCCGTCGTAGAGACCGGCCAAATTTAGATCATGTGGTTCTTGAACTGAAACATTTGAAAGAAGTTGCTGACAGGGCCCAAAGTTCCAGTCTTAGTTTTAAATCAAAACCTCCAAATCATTTGATTTGCCCAATACTCCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATACACGTACGATCGCAAAGCAATCGCAACATGGCTTCAAGAGAACGACATATCACCGGTGACTACTATGGAACTTCCTCATAAGAATATAATCCCTAATTACACACTTCTATCAGAAATTATGGAGTGGAAGTCTGGAGGAAAATGA 2502 0.4137 MVVGYLLFLKLVSTFNRVGFVXEFTVSSRKRVMEEKEEGKNELQHAPSSVVVVGIKGSRKSKSILQWALKRFVPEGRIMFKLIHVHASIKAVPTPMGNFIPISQVRPDVANAFKKEVNWQKSQMLLPYKNMCDQRKIYADAMVIESDDVATAIAEEIAKGSATKLVIGASSRSIFSSKLKGIAAKISVCTPRFCTVYAISKGKLSSVRPSDIQIDENVVDDSSETNGSTSSSNYSSTSQSDSTTVASYGPSNSSITEQRFQALSSINQTILSANPSFIESNHSRCQSLAIGTENNVTSLSARSSSIGYGLSQASSCKSFKSETESCVYVQNFTIDVPPATESPSPVRQENINLELEKLRIELRHAQGLHAIARSENTDASRKLNDLNKRRSDELMKLNEIIAKEELAKESLRQDKEKYEAAKREADYVKECAEREAAERRDMQTKAVRAAQEKEKLESALTGSTPQYHKFTWDDIVSATSSFSEDLRIGMGAYGTVYKCNLHHTVVAVKVLHSKGSHKSKQFQQEIEILSRIRHPNLLLLLGACPENGCLVYEYMENGSLEDRLFKKNGTAPIPWNERYRIAWEVASALAFLHSSKPTSIIHRDLKPANILLDSNLVSKIGDIGLSTVLNSDVSSTMYKDTGPVGTLCYMDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALTHVVETAVDDGRLTDILDPEAGSWPLQETMDLARLGLSCTELRRRDRPNLDHVVLELKHLKEVADRAQSSSLSFKSKPPNHLICPILQDVMDDPCVAADGYTYDRKAIATWLQENDISPVTTMELPHKNIIPNYTLLSEIMEWKSGGK 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1177 833 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 51 180 - -
Lele29g1177 833 ProSiteProfiles U-box domain profile. 762 833 IPR003613 GO:0004842|GO:0016567
Lele29g1177 833 SUPERFAMILY RING/U-box 755 829 - -
Lele29g1177 833 CDD RING-Ubox_WDSUB1_like 767 806 - -
Lele29g1177 833 Gene3D HUPs 43 182 IPR014729 -
Lele29g1177 833 Pfam U-box domain 764 829 IPR003613 GO:0004842|GO:0016567
Lele29g1177 833 Gene3D Phosphorylase Kinase; domain 1 460 554 - -
Lele29g1177 833 MobiDBLite consensus disorder prediction 215 250 - -
Lele29g1177 833 Coils Coil 394 435 - -
Lele29g1177 833 CDD STKc_IRAK 488 745 - -
Lele29g1177 833 Pfam Protein kinase domain 485 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g1177 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 763 832 IPR013083 -
Lele29g1177 833 CDD STK_N 50 202 - -
Lele29g1177 833 SMART serkin_6 482 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g1177 833 Gene3D Transferase(Phosphotransferase) domain 1 555 762 - -
Lele29g1177 833 SUPERFAMILY Protein kinase-like (PK-like) 463 742 IPR011009 -
Lele29g1177 833 PANTHER OS02G0152300 PROTEIN 50 827 - -
Lele29g1177 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Lele29g1177 833 Coils Coil 348 389 - -
Lele29g1177 833 MobiDBLite consensus disorder prediction 219 250 - -
Lele29g1177 833 ProSiteProfiles Protein kinase domain profile. 482 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g1177 833 ProSitePatterns Protein kinases ATP-binding region signature. 488 509 IPR017441 GO:0005524
Lele29g1177 833 Coils Coil 439 459 - -
Lele29g1177 833 SMART Ubox_2 766 828 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1177 Lele-ChrLele29 13722748 13730205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1177 48 830 U-box Gene Family AT4G25160 51.103 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lele29g1177 Pkinase 4.8e-42 CL0016