Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1085 ATGGCATCAATCGTTCTTAAGCTTTTCTTTTCCCTCACTTTCTTTTCTTCACTTTTCTCAATACTTTCTTCTTCTTCATCTATAGAGTTTTTGTGTGACCAAACTCTTCACCCTGAGCCATGCAAATACCACATGAGCCAGAACAGTCACCACCGGTTCAGACCGAACCATCCGTCAGAGTTCAGGAAAACGCTGGTTCAGTTAGCACTGGACCAAGCCGGCGCCATGCATAAGGAAGTTCATGAAAATGGCCCAAAATGTGAGACCAAGATGAAGAAATGTGTGTTGAGTGATTGTTTAAAGCTCTATGACAACACCATCTTCCATCTCAACCGAACCCTTCAAGGCCTACACACTGCTTCTTGCTCTCTATCAGACGCACAAACATGGCTCAGCACTGCCCTCACTAACATCCAAACTTGCCGGAGCGGCGCGTTGCAGCACGGAATTGTGTCTCTGAATAATGCAAGCGACAGCGTTAGGAAGATGATAAGCAACGTGTTAGCTGTGAATGGGAAATCTCTGAAGCGAGAGAATTACACAGAAGATGAAGAGATCAAAGGACACGGTTTTCCGAGCTGGTTTTCTCGGCCTGACCGGAGGCTCTTGAGCTTGAAGCAATCGTCGTTGAAGGCACATCTGGTGGTAGCTCAAGACGGCACGGGCCATTTCAAGACGGTGCAAGCCGCCATTGATGTAGCTTCAAGGAGAAGAGTGAAGACGAGGCTTGTCATAAGAGTGAAGAAAGGGATATATGAAGAGAATATTGAAGTTGATAAGAATAATGAGAATCTCATGATTGTTGGAGATGGAACCAGAGCCACCATTATAACTAGTAGTAGAAGCGTTAAAGACGGAATTACCCCCGCTAGCTCCGCAACAGCAGGTATAGATGGTGCTCACTTCATTGCACGAGACATCACTTTCAGAAACACGGCGGGTCCCGTAAAAGGCCAAGCGGTGGTACTACGATCAGCCTCCGACCACTCCGTCTTCTACCGGTGCTCCATCGAAGGCTACCAAGACACTCTAATGGCTCATGCACAACGCCAATTCTATAGAGACTGCAGAATCTTCGGAACAGTGGATTTCATATGGGGCAATGCCGCAGTTGTTCTACAAAACTGCAGAATTCTGGTAAGAAAGCCACTTGAAGGGCAAGCCAACATGATCACAGCTCAAGGACGAGGCGACCCCTTTCAGAACACCGGAATATCGATCATCAACTCTCAGATTCGAGCGGCGCCGGATTTCAGGCGGGTTTCAAAGTCATTTGAGACGTATTTGGGTCGGCCATGGCAGCAATATGCAAGAGTGGTTGTCATGAAGACGTACATGGAAGGATTGGTGAATCCAAAGGGGTGGTCTCCATGGGGTGAAAGTGATAATTATGCACAAGATACGTGCTATTTTGGGGAATATATGAACTTTGGGTCTGGTTCGGCAACAAAAAGTAGGGTACAATGGAAAGGGTTTCATGTTATAAGGAATCCAAATGAGGCAAACCAGTTCAGTGTTACCGCTTTCCTTGCTGGTCGCACATGGTTGCCTCGCACTGGGATCCCTTTTAGTAATGGGGTTTAA 1584 0.4691 MASIVLKLFFSLTFFSSLFSILSSSSSIEFLCDQTLHPEPCKYHMSQNSHHRFRPNHPSEFRKTLVQLALDQAGAMHKEVHENGPKCETKMKKCVLSDCLKLYDNTIFHLNRTLQGLHTASCSLSDAQTWLSTALTNIQTCRSGALQHGIVSLNNASDSVRKMISNVLAVNGKSLKRENYTEDEEIKGHGFPSWFSRPDRRLLSLKQSSLKAHLVVAQDGTGHFKTVQAAIDVASRRRVKTRLVIRVKKGIYEENIEVDKNNENLMIVGDGTRATIITSSRSVKDGITPASSATAGIDGAHFIARDITFRNTAGPVKGQAVVLRSASDHSVFYRCSIEGYQDTLMAHAQRQFYRDCRIFGTVDFIWGNAAVVLQNCRILVRKPLEGQANMITAQGRGDPFQNTGISIINSQIRAAPDFRRVSKSFETYLGRPWQQYARVVVMKTYMEGLVNPKGWSPWGESDNYAQDTCYFGEYMNFGSGSATKSRVQWKGFHVIRNPNEANQFSVTAFLAGRTWLPRTGIPFSNGV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1085 527 PANTHER PECTINESTERASE 17 517 - -
Lele29g1085 527 SUPERFAMILY Pectin lyase-like 211 526 IPR011050 -
Lele29g1085 527 Gene3D - 207 527 IPR012334 -
Lele29g1085 527 FunFam Pectinesterase 207 527 - -
Lele29g1085 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 173 IPR035513 -
Lele29g1085 527 Pfam Plant invertase/pectin methylesterase inhibitor 27 169 IPR006501 GO:0004857
Lele29g1085 527 SMART PMEI_2 23 170 IPR006501 GO:0004857
Lele29g1085 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 172 IPR006501 GO:0004857
Lele29g1085 527 Pfam Pectinesterase 214 512 IPR000070 GO:0030599|GO:0042545
Lele29g1085 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 172 IPR035513 -
Lele29g1085 527 CDD PMEI-like_3 31 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1085 Lele-ChrLele29 8448888 8451010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1085 24 525 Carbohydrate Esterase AT5G51500 55.078 0.0 565