Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1084 ATGCTGGTTCAGTTAGCACTGGACCAAGCCGGAGCGATGCATAAGGAAGCTCATGAAAATGGCCCAAAATGTGAGACCAAGATGCAGAAATGTGTGTTGAGTGATTGCTTAAAGCTCTATGACAACACCATCTTCCATCTCAACCGAACCCTTCAAGCCCTACACACTGCTTCTTGCTCTCTTTCAGACGCACAAACATGGCTCAGCACTGCCCTCACTAACATCCAAACTTGCCGGAGCGGCGCGTTGCAGCACGGAATTGTCTCTCTGAATAATGCAAGTGACAAAGTTAGGAAGATGATAATCAACGTGTTATCTGTGAATGGGAAATCTCTGAAGCGAGAGAATTACACAGAAGATGAAGAGATCAAAGCACACGGTTTTCCGAGCTGGTTTTCTCGGCCTGACCGGAGGCTCTTGAGCTTGAAGCGATCGTCGGTGAAGGCACATCTGGTGGTAGCTCAAGACGGCACGGGCCATTTCAAGACGGTGCAAGCCGCCATTGATGTGGCGTCAAGGAGAAGAGTGAAGACGAGGTTTGTGATAAGAGTGAAGAAAGGGATATATGAAGAGAATATTGAAGTTGATAAGGATAATGAGAATCTTATGATTGTTGGAGATGGAACCAGACTCACGATTATTACTGGAAGCAGAAGCGTTAAAGATGGAATTACCCCGGCTATGTCTGCAACAGCAGGTATAGATGGCGCTTACTTTATTGCACGAGACATCACTTTTAGAAACACGGCGGGTCCAGAAAAAGGGCAAGCGGTGGCTCTCCGATCAGCCTCCGACCTCTCCGTCTTCTACCGGTGCTCGATCGAAGGCTATCAAGACACGCTAATGGCTCATGCACAACGCCAATTCTATAGAGATTCTAGAATCTTCGGCACAGTTGATTTCATTTGGGGTAATGCCGCAGTTGTTCTACAAAACTGCAGAATTCTAGTAAGAAAACCACTTGAAGGGCAAGCCAACATGATCACAGCACAAGGACGAGGCGACCCGTATCAAAACACCGGAATATCGATCATGAATTGTCAAATTCGAGCCGCACAGGATTTCAGGCCGGTTTTACACTCGTTTGAAACCTATTTGGGTCGGCCATGGCAGCAATATGCTCGAGTAGTGGTCATGAATACGTACATTGAAAGCTTGGTGAATCCTAAGGGCTGGTCTTCATGGGGTGAAAGTGACAATTTTGCTCAAGATACGTGTTATTTTGGGGAATATAAGAACTTTGGGGCCGGTTCATCAACAAAAAGTAGGGTTCAGTGGCCTGGGTTTCATGTCATAGCCAGTCCAAATGAGGCAAACCGGTTCAGTGTTGCTGGTCTCCTTCATGGTCACACTTGGTTGCCTCACACTGGGGTACCTTTTAGTATTGGTGTTTAA 1395 0.4674 MLVQLALDQAGAMHKEAHENGPKCETKMQKCVLSDCLKLYDNTIFHLNRTLQALHTASCSLSDAQTWLSTALTNIQTCRSGALQHGIVSLNNASDKVRKMIINVLSVNGKSLKRENYTEDEEIKAHGFPSWFSRPDRRLLSLKRSSVKAHLVVAQDGTGHFKTVQAAIDVASRRRVKTRFVIRVKKGIYEENIEVDKDNENLMIVGDGTRLTIITGSRSVKDGITPAMSATAGIDGAYFIARDITFRNTAGPEKGQAVALRSASDLSVFYRCSIEGYQDTLMAHAQRQFYRDSRIFGTVDFIWGNAAVVLQNCRILVRKPLEGQANMITAQGRGDPYQNTGISIMNCQIRAAQDFRPVLHSFETYLGRPWQQYARVVVMNTYIESLVNPKGWSSWGESDNFAQDTCYFGEYKNFGAGSSTKSRVQWPGFHVIASPNEANRFSVAGLLHGHTWLPHTGVPFSIGV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1084 464 Pfam Pectinesterase 151 449 IPR000070 GO:0030599|GO:0042545
Lele29g1084 464 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 108 IPR006501 GO:0004857
Lele29g1084 464 SUPERFAMILY Pectin lyase-like 147 463 IPR011050 -
Lele29g1084 464 Gene3D - 144 464 IPR012334 -
Lele29g1084 464 CDD PMEI-like_3 1 110 - -
Lele29g1084 464 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 110 IPR035513 -
Lele29g1084 464 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 108 IPR035513 -
Lele29g1084 464 PANTHER PECTINESTERASE 15 454 - -
Lele29g1084 464 FunFam Pectinesterase 144 464 - -
Lele29g1084 464 Pfam Plant invertase/pectin methylesterase inhibitor 2 106 IPR006501 GO:0004857
Lele29g1084 464 SMART PMEI_2 1 107 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1084 Lele-ChrLele29 8442866 8444622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1084 1 464 Carbohydrate Esterase AT3G47400 55.741 0.0 530