Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1083 ATGGCATCAATCGTTGTTAAGCTTTTCTTCTCACTCGCCTTATTTTCTTCTCTTTTCTCAATATCATCATCTTCTTCAAGAAAATTATCATCATCATCTATAGATTTTTGGTGCAACCAAACTCCTCATCCTGAACCATGTAAATACCACTTAAGCCAGAGCAACCACTGGTTCAGACCGAACCACCGGTCCGAGTTCAGGAAAATGTTGGTTCAATTAGCCATGGAACAAGCTCAAGCTATGCATAATCAAGCACAAGAATATGGCCCAAAATTTGAGACCACAATGCAGAAATTTGTGTTCAATGATTGTTTAAAGCTCTATGACAACACCATCTTCCATCTAAACCAAACCCTTCAAGCCCTACACACTGCTTCTTGCTCTTTATTAGATGCACAAACATGGCTCAGCACTGCCCTCACAAACATCGAAACCTGCCGGAGCAGCGCGTTGCAGCTCGGAATCATCGGAGAGTTTACAGGTCGAAAGAATGCAAGCGACAATGTTAGGAAGATGATAAGCAATGTGTTAGCTGTTAATGGAAAATTTCTGAAGCAAGAGAAACACACAGAAGACAAAGAGATCAAGAAACGTAGTTTTCCGAGCTGGTTTTCTCGGCATGACCGGAGGTTGTTGAGCTTCAGTTCATCTTCTTTGAAGGCTAATCTTGTGGTGGCTCAAGATGGAACGGGCCATTTTAAGACAGTGCAAGCTGCCATTGATGAAGCTTCAAGGAGAACAGTGAAGAATAGTTTTGTGATAAGAGTGAAGAAAGGGGTTTATGAGGAAAATATTGAAGTTGATAACAATAATCAAAATATCATGATTGTTGGAGATGGAATGAGCAGTACTATTATAACTGGTAATAGAAGCGTTAAAGATGGAATTACCCCCTCTATGTCTGCAACAGTTGGCATAGATGGAGCTCACTTCATTGCACGAGACATCACTTTCAGAAACACGGCGGGTCCCAAAAAAGGCCAAGCGGTGGCGCTCCGATCAGCCTCCGATCTATCCGTCTTCCACCGGTGCTCCATCGAAGGCTATCAAGACACACTAATGGCTCATGCACAACGCCAATTCTACAGAGACTGTAGAATCTTCGGCACAGTGGATTTCATTTGGGGCAATGCCGCAATTGTTCTACAAAACTGCACCATTCTCGCAAGAAAGCCCTTACAAGGACAAGCAAACATGGTGACAGCACAAGGACGAGGCGACCCGTTTCAGAACACCGGAATATCAATAATCAATTCCCAAATTCGAGCCGCACCGGATCTTAGACCAGTCGTAGAGTCATATAAAACCTATTTGGGTCGGCCATGGCAGCAATATGCAAGAGTAGTTGTTATGAAAAGTTACATTGAAGGATTGGTGAGTCCTTTGGGTTGGTCTCCATGGGGAGATAGTGATTTTGCTAAAGATACGTTGTATTTTGGGGAATATATGAACCATGGGGCCGGTTCGTCAACAAAAGATCGGGTTCAATGGCCCAGTTTTCATGTTATGAAGAACCAAAATGATACAGATCAGTTTACTGTTGAAGGGCTTCTTGCTGGTAACACATGGTTGCCTCCCATTGGTGTGCCTTTTGATATTGGTGTTTAA 1608 0.4303 MASIVVKLFFSLALFSSLFSISSSSSRKLSSSSIDFWCNQTPHPEPCKYHLSQSNHWFRPNHRSEFRKMLVQLAMEQAQAMHNQAQEYGPKFETTMQKFVFNDCLKLYDNTIFHLNQTLQALHTASCSLLDAQTWLSTALTNIETCRSSALQLGIIGEFTGRKNASDNVRKMISNVLAVNGKFLKQEKHTEDKEIKKRSFPSWFSRHDRRLLSFSSSSLKANLVVAQDGTGHFKTVQAAIDEASRRTVKNSFVIRVKKGVYEENIEVDNNNQNIMIVGDGMSSTIITGNRSVKDGITPSMSATVGIDGAHFIARDITFRNTAGPKKGQAVALRSASDLSVFHRCSIEGYQDTLMAHAQRQFYRDCRIFGTVDFIWGNAAIVLQNCTILARKPLQGQANMVTAQGRGDPFQNTGISIINSQIRAAPDLRPVVESYKTYLGRPWQQYARVVVMKSYIEGLVSPLGWSPWGDSDFAKDTLYFGEYMNHGAGSSTKDRVQWPSFHVMKNQNDTDQFTVEGLLAGNTWLPPIGVPFDIGV 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1083 535 CDD PMEI-like_3 37 185 - -
Lele29g1083 535 SMART PMEI_2 29 179 IPR006501 GO:0004857
Lele29g1083 535 Gene3D - 216 535 IPR012334 -
Lele29g1083 535 Pfam Pectinesterase 222 520 IPR000070 GO:0030599|GO:0042545
Lele29g1083 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 183 IPR035513 -
Lele29g1083 535 Pfam Plant invertase/pectin methylesterase inhibitor 33 178 IPR006501 GO:0004857
Lele29g1083 535 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 181 IPR006501 GO:0004857
Lele29g1083 535 PANTHER PECTINESTERASE 15 525 - -
Lele29g1083 535 SUPERFAMILY Pectin lyase-like 218 534 IPR011050 -
Lele29g1083 535 FunFam Pectinesterase 216 535 - -
Lele29g1083 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 184 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1083 Lele-ChrLele29 8436791 8438929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1083 31 535 Carbohydrate Esterase AT3G47400 54.264 0.0 561