Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1080 ATGGCATCAATCGTTCTTAAGCTTTTCTTTTCCCTCACTTTCTTTTCTTCACTTTTCTCAGTATCTTCTTCATCATCTATAGATTTTTGGTGTGACCAAACTCCTCACCCTGAGCCATGCAAATACCACATGAGCCAGAACAGTCATTACCGGTTCAGACCGAACCATCCGTCGGAGTTCAGGAAAATGCTGGTTCAATCAGCACTGGACCAAGCCGGAGCCATGCATAAGGAAGCTCATGAATATGGCCCAAAATGTGTGAGCAAGATGCAGAAATGTGTGTTGAGTGATTGTTTAAAGCTCTATGACAACACCATCTTCCATCTCAACCGAACCCTTCAAGCCCTACACACAAATTCTTGCTCACTTTCAGACACACAAACATGGCTCAGCACTTCCCTCACAAACATCGAAACTTGCCGGAGAAGCGTGTTGCAGCACGGAATCGTCGGAGGGTTTACAGCTCCAACTAATGCGAGCGACAACGTTAGGAAGATGATAAGCAACGTGTTAGCTGTGAATGGGAAATTTCTGAAGCAAGAGAATTATACAGAAGAAGATCAGATCAAAGCTTATGGTTTTCCGAGCTGGTTTTCTGGGCATGACCGGAGGTTGTTGAGCTTGAAGCGATCTTCGGTGAAGGCACATCTGGTGGTGGCTCAAGATGGCACGGGCCATTTCAAGACCGTGCAAGCCGCCATTGATGTAGCTTCAAGGAGAAGGGTGAAGACCAGGTTTGTGATACGAGTGAAGAAAGGGATATATGAAGAGAATATTGAAGTTGATAAGGATAATGAGAATCTCATGGTTGTTGGAGATGGAATGAGAAGTACCATTATAACTGATAGTAGAAGTGTTAAAGACGGAATTACCCCCGCTAGCTCCGCAACAGCAGGTATAGATGGTGCTCACTTCATTGCACGAGACATCACTTTAAGAAACACGGCCGGTCCAGAAAAAGGCCAAGCGGTGGCTCTCCGATCAGCCTCCGATCTCTCCGTTTTCTATCGGTGCTCAATAGAAGGCTATCAAGACACTCTAATGGCTGATTCACAACGCCAATTCTATAGAGGTTGTAAAATTTTCGGCACAGTGGATTTCATATGGGGAAGTGCCGCAGTTGTTCTACAAAACTGCAGAATTCTGGTAAGAAAGCCACTTCAAGGGCAAGCCAACATGATCACAGCACAAGGAAGAGACAACCCGTTTCAGAACACCGGAATATCGATCATAGACTCTCAGATTCAAGCCGCACCGGATTTCATGGCGGTGTCAAAGTCATTTGAGACCTATTTGGGTCGGCCATGGCAGCAATATGCAAGAGTGGTTGTTATGAAAACTTACATGGAAGGACTGGTGAATCCAAAAGGCTGGTCTCCATGGGGTGAAAGTGACAATTATGCACAAAATACGTGCTATTTTGGGGAATATATGAACTTTGGGGCTGGTTCAGCATCAGAAAGTAGGGTTGAATGGAGGGGATTTCATGTAATAGGTGATCCAAATGAGGCAAACCAATTTAGTGTTGCTAGATTTCTTGCTGGTCGCACATGGTTGCCTCGTACTGGGGTACCTTTTAGTAATGGTGTTTAA 1593 0.4507 MASIVLKLFFSLTFFSSLFSVSSSSSIDFWCDQTPHPEPCKYHMSQNSHYRFRPNHPSEFRKMLVQSALDQAGAMHKEAHEYGPKCVSKMQKCVLSDCLKLYDNTIFHLNRTLQALHTNSCSLSDTQTWLSTSLTNIETCRRSVLQHGIVGGFTAPTNASDNVRKMISNVLAVNGKFLKQENYTEEDQIKAYGFPSWFSGHDRRLLSLKRSSVKAHLVVAQDGTGHFKTVQAAIDVASRRRVKTRFVIRVKKGIYEENIEVDKDNENLMVVGDGMRSTIITDSRSVKDGITPASSATAGIDGAHFIARDITLRNTAGPEKGQAVALRSASDLSVFYRCSIEGYQDTLMADSQRQFYRGCKIFGTVDFIWGSAAVVLQNCRILVRKPLQGQANMITAQGRDNPFQNTGISIIDSQIQAAPDFMAVSKSFETYLGRPWQQYARVVVMKTYMEGLVNPKGWSPWGESDNYAQNTCYFGEYMNFGAGSASESRVEWRGFHVIGDPNEANQFSVARFLAGRTWLPRTGVPFSNGV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1080 530 Pfam Plant invertase/pectin methylesterase inhibitor 26 172 IPR006501 GO:0004857
Lele29g1080 530 PANTHER PECTINESTERASE 15 520 - -
Lele29g1080 530 SUPERFAMILY Pectin lyase-like 213 529 IPR011050 -
Lele29g1080 530 Gene3D - 210 530 IPR012334 -
Lele29g1080 530 FunFam Pectinesterase 210 530 - -
Lele29g1080 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 178 IPR035513 -
Lele29g1080 530 SMART PMEI_2 22 173 IPR006501 GO:0004857
Lele29g1080 530 CDD PMEI-like_3 30 179 - -
Lele29g1080 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 177 IPR035513 -
Lele29g1080 530 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 175 IPR006501 GO:0004857
Lele29g1080 530 Pfam Pectinesterase 217 515 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1080 Lele-ChrLele29 8364385 8366097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1080 23 528 Carbohydrate Esterase AT5G51500 54.581 0.0 566